Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381100
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Entry
139381100 CDS
T10872
Name
(RefSeq) cholesterol transporter ABCA5
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139381100
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139381100
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
139381100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
139381100
NCBI-ProteinID:
XP_070980481
LinkDB
All DBs
Position
23:complement(30495725..30582961)
Genome browser
AA seq
1687 aa
AA seq
DB search
MYFIPIAPSCGERPHSCPRQLKHAGSNVSMQPNIIRRDAGVWHQTKSLLYKNLLIKWRTK
QQSLQELILPLLLLCLLILISTLNPHVYYGGISTMQLEREDYHLLKGLGYTPINNATNHI
MEEVAQEMHLQDRLEMFSSEEDLENASLYEPSGYVGVVFMGSTPTSYRLRFPYNHLPLPS
DYTESIANCFASSVNCRAANYWYSGFIRLQTLIDAAIIQMQTKRSVWSEMDHLRVVMMGQ
PGSVEVQKFPHALISIYLVLAFTPFITFLIVNVAAEKEHRLKDTMTMMGLYDSAFWLSWG
LLYAALVTTMSILMSIIATYTALFPNSDFIVIFLLIFLYGISSIFFSFMLTPLFKKPKFA
STVGSMLTVVFGCLSLFTVLMKDFPQPLVWVLCLLSPSAFSIGIAQVVYLEAQGDGAVFA
TLANGPHPLYAPLLMLVLDCILYLLLAVYLDQVLPGEFGMRRSLVYFMKPSYWSKRSKRY
VEVSSVYETEVNGAPGVNESVEPVSPEFRGKEAIRINNIRKVYKEKDSIVEALRGLTFDI
YEGQITALLGHSGAGKSTLMNILCGICPPTDGHASIYGSPVAEIAEGVEMRQLVGICPQF
NIIFDVLTVEEHLRIFAAIKGILPSDIDNEVSKVLKDLDLEKIMDAQAKNLSGGQKRKLS
VGIAILGDPKILLLDEPTAGMDPCSRHQVWSLLKSRRAGRVTVLSTHYMDEADILADRKA
VISQGQLKCVGSSLYLKTKCGVGYHLRMSIGGRCEVDGVTSLVKHHVPKAQLSRQQEAEL
TFTLPFESMDTFSGLFSELDCRPDLGIINYGVSMTTLEDVFLRLEAEAEVDQADYSVFNQ
EQVEDEGDASSLDDTDQRLLTFSDSKPEAVQGHALWRQQFSTVAWLHMLNMQRERKAFVY
TLALFLVFLAAVLVLSLATGNIQIHAPERQFLPIYLLRPNQVPRKYTTSLLVQNSSGSDI
SDFIRNLESQDIKVEMMKNTDYMSCAPHSAAINVTGSNKGFRYSVAFNSTTVHSLPMTVN
VLSNAILRGLNGTQHIHTWTKPFDYQIPDATSYALVYIEAIILGMLAAGMPAYFAMDHTR
DREIKCRSTLRISGLVPSAYWCGQAAVDIPFYYLILTTMTSILFSFHTANLLTSSNVTAV
ILCLIGFGPAMILFAYVVSFMFTRVQSNRDFFSVVSMMVCVVSASIVQLSFVNDNPGLTR
ILHNTLCFFNPLYPLMGCLNSITKATFLPSLYEEDFLWKNLLIAVLSPYLQCILLLFMLR
WLEIRYGGRTMKNDQFCRISSNTKAKVERNPEEGINEDEDVQMEKARVKEALTCQCCEEK
PVVVVSNLRKQFKCPREGISLKKRRTVATKNISFCVRKGEVLGLLGPNGAGKSTIMHMLS
GDTVPTAGQVLMGDYSTEFRPVDNPLEHIGYCPQVSPLWPRITLEEHLEIYAAIKGLRGQ
DVPGIITRVVNALELKGHLHKQAKNLSAGIKRKLCFALSMLGNPQIVLLDEPSTGMDPKS
KQRMWRAIRAAFKNRQRGAILTTHYMEEAEAVCDRVAIMVSGQLRCIGSIQHLKGKYGRG
YSLELKLREELTGLQQVALLHKEIRRIFPHAARQESFATLMVYKIPMEDVKSLAKSFSQL
ESAKQAFNFEEYNFSQSTLEQVFMEFAKEQENEEEEVGSLSTTFQWQRLRQDGPVPVNHT
DSIVHQL
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcatacctattgcgcccagctgtggagaacgtcctcattcatgccccagacag
ttgaagcatgctggtagtaacgttagtatgcagcccaacataatcagaagagatgccgga
gtctggcatcaaacgaaaagcctgctttacaagaatcttctcatcaaatggaggactaaa
caacagagtctgcaggagttgatcctgccgctgctgctgctgtgcctgctgattctgatc
agcaccctgaacccacatgtctactacggaggcatcagtaccatgcagctggagagggag
gactaccacttactcaagggcctgggatacacccccattaacaatgccaccaatcacatc
atggaggaggtggcccaggaaatgcacttgcaggatcgcctggagatgttctctagtgaa
gaggatctggagaatgccagtctttatgagccctcaggctacgttggggtggtcttcatg
ggaagcacacccacctcttacaggttgcgcttcccttacaaccatctgcccctgcccagc
gactacactgaatctattgccaactgttttgccagctcagtgaactgcagagcagctaat
tactggtactctggcttcatccgcctccagactctcatcgacgccgccatcatacagatg
cagaccaagcggtcagtatggagtgagatggaccacctgcgtgtggtgatgatgggccag
ccagggtcagtggaggtccaaaagtttccccacgctctcatctccatctacctggtgctg
gctttcacacccttcatcaccttcctcatcgtcaacgtggcagcagagaaggaacacagg
ctcaaagacaccatgaccatgatgggcctctacgactctgctttctggctttcgtggggc
ctgctgtatgcagctctggtcaccaccatgtccatcctcatgtccatcatcgctacctat
acagctctcttccccaacagtgacttcatcgtcatcttcctcctcatcttcctctacggc
atctcctctatcttcttctccttcatgctgacccctctgtttaagaagcctaagtttgcc
agtacggtgggctcaatgctgactgtggtgttcggctgcctgtccctgttcactgtcctg
atgaaggacttcccccagccgctggtctgggttctttgtctgctgtcccccagcgcattc
tccatcggcattgcccaggtggtgtacctggaggcccagggggacggagctgtgttcgct
accctggccaacggcccccatcccctctacgccccccttctcatgctcgtcctggactgt
atactctacctgctgctggctgtctacctggaccaggtcctaccaggtgagtttggcatg
cggcgctccctggtatacttcatgaagccatcctattggtccaagcgcagtaagcgctac
gtcgaggtgagctctgtgtacgagacggaggtgaacggggccccaggagtgaatgagtct
gtggagcccgtctctccggaattcagggggaaagaggccatccgcattaacaacatccgc
aaggtgtacaaagagaaggacagcatcgtggaagctctgaggggcttgacctttgacatc
tatgaaggtcagatcacagccctcctgggccacagcggagcagggaagtccactctgatg
aacatcctgtgtgggatctgtcctccgactgacggccacgcctccatctatggctcccct
gtggcagagatcgctgagggggtagagatgaggcagctggtgggcatctgccctcagttc
aacataatctttgacgtgctcactgtagaagagcacctgaggatatttgctgccattaaa
gggattctgccctctgacattgacaatgaggtgtccaaggtgctgaaggatctagacctg
gagaagatcatggacgcccaggctaagaacctaagtggaggccagaagaggaaattgtct
gtgggcatagccatcctgggagaccccaagatcctgctcctggatgagcctactgctggt
atggacccctgttccagacaccaggtgtggtctctgctgaagagtcgcagagcaggcaga
gtcacagtgctcagcacacattacatggacgaggcagacatactcgctgaccgcaaagct
gtgatctctcagggccaacttaagtgtgttggttcttccctatatctcaagaccaagtgt
ggagtaggataccacctcagaatgtctattggtggacggtgtgaggtggatggtgtcaca
tcattggtcaagcaccacgtccccaaggcacagttgtcacggcaacaagaggctgagctg
acattcaccctccctttcgaaagcatggacaccttttcaggattgttctcagaactagac
tgcaggccagacctgggcatcatcaactacggggtgtccatgacaacgctggaggatgtg
tttcttcgtctggaggctgaggctgaggtggaccaggctgactacagtgtgttcaaccag
gagcaggttgaggatgaaggtgatgcatcctctctggacgacactgaccaaagactactg
accttctctgacagcaagccagaggcggtccagggccatgctctgtggagacagcagttc
agcaccgtggcctggctacacatgctcaacatgcagagagagaggaaggcctttgtctac
actctggcattgttcctggtcttcctagctgctgtgctagtattgtctctggctacgggg
aacatccagatccacgctccagaacggcagtttctccccatctacctgctgagaccgaac
caggttccccggaaatacaccaccagtctactggtccagaactcatcaggctcggatatc
tccgacttcatccgtaacctggaatctcaggacatcaaggtggagatgatgaagaacaca
gactacatgtcctgtgctcctcacagtgcagccatcaacgtcaccggatccaacaagggt
ttcagatacagtgtagcattcaacagtactaccgtccactctttgcccatgacagtcaac
gtcctcagtaacgccatcctacgaggtctcaacggcacacaacacatccacacctggacc
aagcccttcgactatcaaattcccgacgccacgtcatatgctctggtctacattgaggct
atcatactggggatgctagctgcaggcatgcctgcctacttcgccatggaccacacccga
gacagagagataaagtgccgttcaacgctgcgtatctctggcctggtcccgtctgcgtac
tggtgtggtcaggctgcagtggacatccccttctactacctcatactgaccaccatgacc
agcatcctcttctccttccatactgccaacctgcttacctctagcaacgtcaccgcagtg
atcctgtgtctgataggttttggtccagctatgatcctgttcgcctatgtggtgtctttc
atgttcacacgcgtccagagtaacagagacttcttctctgtggtctccatgatggtgtgt
gtggtgtctgcctccatcgtccagctgtcatttgtgaacgacaaccccgggctgacgagg
atcctccacaatacactatgtttcttcaaccctctctaccccttaatgggctgccttaat
tctatcaccaaggccacctttctgccctccctctatgaagaggacttcctctggaagaac
ctgctcatagctgtcctatctccctatctgcagtgcatcctgctgctgttcatgctgcgc
tggttggagatccgctacggagggaggactatgaagaatgaccagttctgcaggatctct
tccaatactaaggctaaagtggagcgtaacccagaggaggggatcaacgaggatgaagat
gttcagatggaaaaggctcgggtgaaggaggccctcacctgccagtgctgtgaggagaaa
ccagtagtggtggtgagtaacttgaggaagcagtttaaatgtccaagggaaggaatctct
ctcaagaagaggaggacggtagccaccaagaacatctccttctgtgtacgcaaaggtgag
gtgcttggactgctggggcccaacggagcagggaaaagcaccatcatgcatatgttatct
ggagacacagtcccaaccgctggacaggtcctgatgggggactacagtacagagttccgt
ccagtagacaaccccctggagcatataggctactgtccccaggtcagccctttgtggccc
cgcatcaccctggaggaacacctggagatctacgctgccatcaagggcctccgcggacag
gacgtccctggcatcatcacacgtgtggtgaatgctctggagctgaagggccacctccac
aagcaggccaaaaacctctcagctgggatcaagaggaagttgtgctttgctctcagcatg
ttgggaaaccctcagatagttctgctggacgagccttctacagggatggaccccaagtcc
aaacaacgcatgtggagggctatccgggcagcgtttaagaaccgccagcgtggggccatt
ctgaccactcactacatggaggaggctgaggctgtgtgtgaccgcgtggccatcatggtg
tcagggcagctcaggtgtattgggtctatccagcacctgaaggggaagtatgggcgtggc
tacagcctggaattgaagctgagagaggagctgacggggctccaacaagtggcactgctc
cacaaggagatccgtcgaatcttccctcacgctgcaagacaggagagctttgccaccctg
atggtttacaagatccccatggaggatgtcaagtcactggccaagtccttctctcagcta
gagagtgctaagcaagccttcaactttgaagagtacaacttttcacaatcaaccttagag
caggtcttcatggagtttgctaaggagcaggagaacgaggaggaagaggtgggttccctc
agcaccacgttccagtggcagcggctccgccaggacggccctgtgcctgtcaaccacaca
gacagcattgtgcaccagctctga
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integrated database retrieval system
