Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381193
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Entry
139381193 CDS
T10872
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139381193
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139381193
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
139381193
NCBI-ProteinID:
XP_070980727
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All DBs
Position
2:43333574..43334796
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AA seq
311 aa
AA seq
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MVNMYNIMEHQLKSSGPSHHLGTGMPPANGGGGHGGGHTGSKPPAIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKLMPKNNTLAAQYQMSAGNHLLSASTAQGQGGNPRIDSYGWGHTGGYTAAM
QSEALGYSQQLHRYDLSALQYQSSVAQAQAYMNGANAYSPMSYSSSPQQVSPVMSMVKQQ
SDGHSMSPSPTGTHNHHQAQRGPQVQGDHLRDMISMYMPGGDASDAQRGYSASAANIQQH
YLGGSAPLTHL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatggagcaccaactcaagtcctctggtccctcgcatcat
cttggaacagggatgccacctgccaatggaggaggggggcacgggggcggccacacagga
tccaaaccaccggcaatccaacccgacccgatggacaaagtcaagcggcccatgaatgcc
ttcatggtatggtctcgcggtgagcgacggaaaatggcccaggagaatcccaaaatgcac
aattctgagatatccaaacgactgggtgtcgcgtggaaatctctgacagacgcagagaaa
aggcccttcattgacgaggccaagcgcctccgcgcggtgcacatgaaggattatccagac
tataaatacaaaccccgtcgtaaaaccaaactaatgccgaagaacaatactctagccgcg
cagtatcagatgtcggctggtaaccacctgctgagtgcgtccacggctcagggacaaggt
ggaaaccccagaatcgacagttatggctggggccacaccgggggctacacagcggcgatg
cagagcgaggcgctcggctacagccagcaacttcaccgctatgacctgtcagcacttcag
tatcagtccagcgtggcccaggcgcaggcctacatgaatggtgccaacgcatacagcccc
atgtcctacagcagcagcccccagcaggtcagcccagtgatgtctatggtgaagcagcag
tctgatggccacagcatgtccccctcccctacggggacccacaaccaccaccaggcccag
cgtggtccccaggtccagggggaccatctcagagacatgatcagcatgtacatgcctggg
ggagatgcttcagatgcccagagggggtactctgcctcggcagctaacatccagcagcat
tacctgggagggtcagctccactcacccacctttga
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