Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381293
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Entry
139381293 CDS
T10872
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139381293
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139381293
Transporters [BR:
ocla02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
139381293
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GFIT
Motif
Pfam:
SNF
RT_RNaseH_2
RT_RNaseH
UL148
Motif
Other DBs
NCBI-GeneID:
139381293
NCBI-ProteinID:
XP_070980851
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Position
23:41840996..41880285
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AA seq
724 aa
AA seq
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MAAPLSVGRHELLPGSVHYTQQRVKERGQWDSKMEFILTVAGAIIGLGNIWRFPYLCYKN
GGGAFFIPYILYLVTCGIPLFILETALGQYTSQGGITCWRKICPLFEGLGYAAQVITIYG
CMTYIVILAWAFHYLFSSFTVDLPWANCNNDWNTDACVTFGTNNVTSNWTVPLLNTSSSV
VEFWQRRVLRISDGIESLGGIRWELALCLLLSWAICYFCIWKGVRSTGKAACFTATFPYV
MLLVLFVRGVTLPGAIDGIFYYMYPNATRLADPQVWMDAGTQVFFSYAICLGYLTSLGSY
NKYNNNCYKDSFYLCLLNSGTSFLSGFAIFSILGYMAGEQGVDISMVAESGPGLVFIVYP
QAVSLLPCPQFWAVCFFTMIILLGLDSQFVGLESLMTSVTDVYPNVLRKGHRRELLLLLI
CCCCCLVGLIMVTEGGLYIIQLFDHYVCSGATLLLLSICQSFSIGWIYGAERFCDNIEDM
IGYRPSSLVKYCWLYITPTMCTGTFVFSLLKYSPLKFNNTYVYPWWAYGLGWFLAMSSLS
LIPITMVYKLYRGQGTFWHRLQAICRPADDLPRIRAGMSPVHIIQRVKRDLERWHQTLKV
MLRKYCMDTMLKEHILSPTPSSSPVLAAPNFDKPFKLEVDASIVGVGAVLLQEDEDGVDR
PVSFFSRKFNSCSVVTGRGHDREGHGLGRLRQSLGANPESLMAQLALQYSALNLCATREA
HILF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcctctctccgttggcagacacgagcttctcccaggatccgtgcattacacc
caacagagggtcaaggagcgtggccagtgggatagtaaaatggagttcattctaactgtg
gctggtgctattattggacttggaaatatatggaggtttccatatctttgttacaagaat
ggtgggggtgccttcttcatcccgtatatcctgtacctggtgacctgtggcatccctctg
ttcatcctggagacggctcttggacagtacaccagccaggggggcatcacctgctggagg
aagatctgcccgctgtttgaaggattgggctacgccgcccaggtgatcactatatatgga
tgtatgacctacattgtgatcctggcctgggctttccactacctgttttcatccttcact
gttgacctgccatgggccaactgtaataatgactggaacacagatgcttgtgtcacattt
ggtaccaataatgtaaccagcaattggactgttcctctcctgaatacgtcatcttcagtt
gtagagttttggcagcggcgagtgctgcggatatcagatggaatagaatcacttggaggc
attagatgggagctggccctgtgccttctgctgtcctgggccatctgctacttctgtatc
tggaaaggagtgaggtctacaggaaaggcagcgtgcttcacggcaacgttcccctatgtc
atgctactggtgctattcgtccgaggagtgaccctacctggagctatagatggcatattc
tactacatgtatcccaatgctacacggcttgctgatccacaggtttggatggatgcagga
acccaggtatttttttcttatgccatatgcctgggatacctgacttctctcggaagctac
aacaaatacaacaacaactgttacaaagactccttctacctgtgcttgttgaacagtggg
accagcttcctgtctggttttgctattttttccatcctgggttatatggctggagaacag
ggtgtggacatctctatggtagctgagtcaggtcctggcctggtgttcatagtgtaccca
caggcagtgtccctgctcccctgtcctcagttctgggccgtgtgtttcttcaccatgatc
atcctgttaggattggacagccagtttgtcggccttgagagccttatgacctcggtaacg
gatgtctaccccaacgtcctcagaaagggccaccggagggagctactgctgctgctcatc
tgctgttgctgctgcctggtcggactcatcatggtcacagagggtggcctctacatcata
cagctgtttgatcattatgtgtgcagtggtgccactctgctactcctctccatatgccag
tctttcagtattggatggatatatggtgctgaacgtttctgtgacaacattgaggatatg
attggctacaggccctcctctctggtgaagtactgttggctatacatcacccctactatg
tgcacaggaacctttgtgttctcgctgctgaagtacagccctctgaagttcaacaacacc
tatgtgtacccgtggtgggcttacgggctgggatggttcctggctatgtcctccctctct
ctcattcccatcaccatggtctacaaactgtaccgaggacaagggacattctggcaccgc
ctccaggcaatctgccggccagcagatgaccttcccaggatcagggctgggatgtctcca
gtccatatcatccagagagtcaaaagggatctagaacgctggcatcagacgctgaaggta
atgctacgcaagtattgtatggataccatgttgaaggagcatatcttatctcctacaccc
agtagttccccagtgcttgccgcccccaactttgacaaaccttttaagttggaggtagat
gctagtatagtgggggtgggtgcggttctcttacaggaagatgaagacggagtggatcgg
cccgtcagtttcttctcccgtaagttcaactcgtgctctgtcgtaaccggccgaggccat
gaccgggagggtcatggcctcggccggttacgacagagcctgggcgcaaacccagagtct
ctgatggcacagctggcgctgcagtacagcgcccttaacctctgcgccaccagggaggcc
catatactgttttaa
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