Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381310
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Entry
139381310 CDS
T10872
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139381310
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139381310
09142 Cell motility
04820 Cytoskeleton in muscle cells
139381310
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139381310
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139381310
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139381310
NCBI-ProteinID:
XP_070980863
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Position
23:50792826..50826075
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AA seq
543 aa
AA seq
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MGVRGPTGPGGSVGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPG
KQGHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGATG
DQGQRGVMGESGPKGDEGSQGGRGITGLPGPKGKGGLSGVDGREGIPGLPGGKGTIGKAG
SPGEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTIGSAGKTGEQGKAGGLGPIGPIG
GPGDSGVQGPAGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEAGEGGPKGEQGGQG
SEGTSGDKGDVGDQGEAGPKGVVGNPGEPGNRGPEGSRGQPGIEGPAGTPGPRGMQGNRG
APGIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAG
PPGDSGFPGQAGARGLPGLKGPPGLLGLKGPKGELGDRGDRGPTVRGAKGQPGPPGLPGE
PGKPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEG
TRN
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgagaggaccaacaggacctggtggatcagtagggccgagaggtgcagcaggg
atgcaggatttgagtgccgagctgtgccctggtgcctgtccacctgggacacctggtcat
cccggcctccctggcatgaagggtcacaaaggagtaaaaggggaaggaggagagcctggg
aaacaagggcacaagggtgaagagggtgaccagggaaccacaggggacctcggatcccag
ggcccaacgggtcctcagggaatcagaggctccactggaatgatggggcccaaaggtgga
ctgggagcacgaggacatgatggagatccaggtccccagggtgttgaaggagccactggt
gaccaaggccagaggggcgtgatgggcgagtctggtcctaaaggtgatgagggatctcaa
ggtggaagaggaatcacaggtcttcctgggcccaaggggaagggtggtttgtcaggagta
gatggccgtgaaggtattcctggattgccaggtggaaagggcaccattggcaaggctggg
tctccaggggaggtggggcttcagggacttcctggattacctggttctcctggctctaaa
ggaactggtggagagaagggtagctctggcgaggcaggtcttcttggaacaataggatct
gctggtaaaacaggagagcaaggcaaagcaggaggtctaggacccattggacccattggc
ggaccgggagacagcggagtacaaggaccagccggtccaccgggcaaaccaggggccagg
ggacctaaaggggatcttggtcttcctggtgttcccggacccccaggcctccccggagtg
aagggagagaggggagaagctggcgagggaggacctaaaggggagcaggggggacaaggt
tctgagggaacctctggagacaaaggagatgttggtgaccagggggaagctggacccaaa
ggagtggttggaaacccaggagagcctggtaacagagggccagagggtagcagagggcag
cctggcatcgagggcccagctggtactcctggaccacgtggcatgcagggcaacaggggc
gcaccaggaatcagggggtcacagggaccggcgggtaaagaaccaagcgatcaacacatc
agacaagtctgcatgagagttatgcaagagcagctagcccagttggctgccagtctaagg
aggccggagtctggagcagcgggcctgcctggtaagccagggcctcctggtcctgccgga
cccccaggggacagtggcttccctgggcaggctggagcaagaggactgcctggcctcaaa
ggacctccaggactcctaggactcaaaggacccaaaggtgaattgggcgacagaggagac
cgaggtcccacggtgcgaggggccaagggccagccaggacctcccggtctaccaggtgag
cccggaaagcctggttacggccaggagggacgtgacggcgagagaggacctccaggtgtt
cctggccaggctggtgtacctgggcctcctggtaatgctggccccaacggctactgcgac
ccatcgtcctgcaacctcagaccgggggacattgacaccagcatcaagggcccggaggga
actagaaactag
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