Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381365
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Entry
139381365 CDS
T10872
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139381365
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Others
Others
139381365
Endosome - Lysosome transport
139381365
Endosome - Golgi transport
139381365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
DUF6085
Motif
Other DBs
NCBI-GeneID:
139381365
NCBI-ProteinID:
XP_070980937
LinkDB
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Position
23:13807241..13871751
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AA seq
1246 aa
AA seq
DB search
MVISGSVWCWAILTCVLSSFYNMLIAYAEINWPASSTTKNVWLNRVDTLPLELRTNLNSV
WVNIPKYIVKESAFSRAFKIEPIDGKPAVPKGGGRLPKDLKRVIGKVTPDAISSGRDKTA
PNRSKYFTDDRKKSDRFFDVNDNDGTLALSNRTKRSTAYGEYSDRSQIGGPGDAFSAEKL
LEPFGVYSPRTEYRRTGEDARTGPRQSESLLVTSTFPLSGDSAHNQAMGHWVGDNSSVIL
TLTKQYDFNLGAFTESSLWRSVDYGSTYIKLNNKVGSTLACLYVCPTNKRKIMMLSDPEL
EHSVLISSDEGASFEKHPINFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVSE
NVTPGRFFWAQTGLDREADMVHMETHIAKGRAQYVTCRAQRCTESNRQYLFPGHIDQNSL
VVQDNYVFVQVTKSGQASYFVSYMRESFKQIQLPKYCLPKDMHIISTDKKQVFAAVQEWN
QNDTYSLYISDSPGVYFTLSLENLRTRREPGGNVLVDMYKVEGINGIFFANKLVDHEVKT
FITYNKGQTWALLQAPNTDVAGNSLHCILPFCSLHLHLDMPVNPYLPGRIFSKDSAPGII
VATGNIGTELSSTSLGMFITSDAGNSWRQIFEEELGVWFLDNGGALVAVSLVATVPIRHI
WISLDEGKKWDRHSFSLVPLFLDGALMQPENHIITFTGHLSRISEWQLIKIDYKAIFSRR
CMDGDYQTWNLHNKGEPCVMGEKQTFMKRRPGNRCMLTQDYSRVISSEPCICRAYDFECD
YGYERQADGKCSPAFWFDPNTVPRICSTSQNYLNSTGYRKVLSNNCKEGGKDVYSPRKQH
CSPRPPRGLRLTTSHGDLTANLGSNITFLVHLDDGNSLWTHIQLDFGDGITVMYNLSRRG
DGIKHSYRAPGIFRVTAHAENSQGYDSSSIFLHITSPVERVYLSAPIVAIRKKEANLTAV
VWPVHQRTLTFFWWFENSSESLITLGGSIAYTFQNEGMNRVVVQVSSGCNILQDTKVIIV
KEFFKSLLLSFSPTLDEHNPDIPEWREDVGRVVRTAVSQVSGFPEEQLLVSLFPGVPTTA
ELFILPETQLSEHGKGNEEGLVSISDILINALNQGLIQFELKPDTQIIVYITQLTSAPLV
DSNPIHSSSAMLMLLSVAFVGLVAFFIFKFKRKIPWIHVQAEENQEKEPERIGTVRQNNT
MSKIKHSEFPSEKELTEKELEARTRGENGRNGERVITREFPTCTNV
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggtcatctcaggttcagtttggtgttgggctattttgacttgcgttttaagctctttt
tacaatatgttgatagcatacgctgaaataaattggccagcgagttccacaacgaagaac
gtttggcttaaccgtgttgatacattgcctttggagctgcgcacaaacctaaactccgta
tgggtcaacatcccaaagtatatcgtcaaggaatctgccttttccagggcttttaaaatt
gaaccaattgatggaaaaccggcggttccaaaaggtggagggagattaccaaaggacttg
aaaagagttattgggaaagtgacacctgatgctatatcttctggcagagataaaactgcg
ccaaaccgttccaagtattttactgatgacagaaaaaagtcggaccgtttttttgacgta
aatgacaatgacggcacacttgctttaagtaaccgtacaaagcgaagtacagcctacggc
gaatattcggacaggagtcaaattggaggtcctggtgacgcattttcagccgagaagctt
ttggagccttttggtgtttatagtccgaggacagaataccgacgaactggggaggacgca
agaactggtccgaggcaaagtgagtcgcttctggtcacctctactttccctctatccgga
gactctgctcacaaccaggcgatggggcactgggttggagacaacagcagcgtgatcctg
accttgacgaagcagtatgactttaacttgggtgctttcactgagagttctctctggaga
tcagtggactatgggagcacttatattaaactgaataataaggttgggtcaaccttggct
tgcctctacgtctgcccaaccaacaagagaaagataatgatgcttagcgacccagagctg
gaacacagtgtactcatcagctcagatgaaggtgccagcttcgagaagcatcccattaac
ttctacatggacggtctgctgtttcatccaacacaggaaaactggctgctggctagcagt
cctgacaacaaggtgtacagcacaatggactttggaagaaaatggcagttggttagtgag
aatgtgactcctggacggttcttctgggcacaaacgggactggacagagaggcagatatg
gtccacatggagacccacatcgccaaaggacgtgctcagtatgttacgtgccgagctcaa
cgatgcacagaatcaaacagacagtacctgttcccgggacacatagaccaaaattctctg
gttgttcaggacaactatgtgttcgttcaggttaccaagtcagggcaggcaagttacttt
gtgtcctatatgagggaatcattcaaacaaattcaactacccaaatactgtcttcccaag
gacatgcacatcatcagtacagataagaagcaggtgtttgcggctgtacaggagtggaac
cagaatgacacctacagcctgtatatctcagactctccaggggtctacttcactctgtct
ctagagaacctccggaccagaagagagccaggcggaaatgtactggttgacatgtataag
gtagaaggaataaacggcatattttttgccaacaaattggtggaccatgaagtgaagact
ttcattacctataacaagggtcagacctgggcccttctgcaagcccctaacactgatgtg
gctggaaacagtctgcactgcatcctgccattttgttctctgcatctgcacctggatatg
cctgtgaacccttacctgcctggacgcatcttcagtaaggactcagcaccagggatcatc
gtagccacaggcaacattggtacagagctgtcttccactagccttggaatgtttataaca
tctgatgctggcaatagctggagacagatatttgaagaagaacttggtgtttggtttctt
gacaatggaggtgctttagttgcagtgtctttagttgcaacagtacccatccggcacata
tggataagtctggacgagggtaagaaatgggatcgtcacagtttctctctggttcctttg
tttctggatggagctcttatgcaaccagagaatcacatcatcactttcactggacactta
agtcgtatttcagaatggcagctgataaagattgactacaaagccatctttagcaggaga
tgcatggacggagattatcagacttggaacctacataacaagggagagccatgtgtgatg
ggagaaaagcagacctttatgaaacggaggccagggaaccgctgtatgctgacccaggac
tactcccgagtcatatcctcagaaccatgcatctgcagggcctatgattttgaatgtgat
tatgggtatgaacgtcaagctgatggaaagtgttcacctgctttttggttcgacccaaat
acggtaccaagaatctgtagcactagccagaattacctcaatagcacagggtacaggaag
gttttgtctaataactgcaaagagggaggaaaggatgtgtactcccccaggaaacagcat
tgttcccccaggcctcccagaggcctcagactgaccaccagccatggagacctcaccgcc
aacctgggcagtaacatcaccttcctggtgcatctggacgatggaaactcgttgtggaca
catatccagctagactttggggatggcatcacggtcatgtacaacctgagccggagaggc
gatgggatcaaacacagctatagagcacctgggatcttcagagtgacagcacatgctgag
aacagccagggatatgacagcagctccatattcttacatatcaccagcccagtggagcgt
gtgtatctctcagctcctattgtggccatcaggaagaaggaagccaacctaactgctgtg
gtctggcccgtccaccaaagaacactaacctttttctggtggtttgaaaacagctctgag
tccttaataaccttgggtggaagcatcgcgtacacgtttcagaatgagggcatgaacagg
gtcgttgtccaggtgtcttctgggtgcaacatactgcaggataccaaggtcatcattgtt
aaagagttcttcaaatccctgctgttatcattctctccgactttggacgagcacaaccct
gacatccctgagtggagagaggatgtgggccgtgtggtgaggacagctgtgtcacaggtg
tctgggtttccagaagagcagctgttggtatcgttgtttccaggtgttccaacaacagca
gaactatttatcctgcctgagactcagttgtctgaacatgggaaagggaatgaagagggc
ttagtgagtatatcagacattcttataaatgccctgaaccaaggattgatccagtttgag
ttgaaacctgacactcaaataattgtttacatcacacagctaacttcggcacctctggtc
gattccaacccaattcacagtagctcagccatgctgatgttgctatctgtggcgtttgtt
ggtttagttgcattcttcatcttcaagttcaaaaggaaaatcccttggatccatgtccag
gctgaggagaaccaggaaaaggagccggagaggatcggcaccgttaggcagaacaacacc
atgtccaagatcaagcacagtgagttcccctcagagaaggaacttacagagaaagaactg
gaggccaggaccagaggagaaaatggaagaaatggggagagagtgatcacaagagagttt
cctacttgtactaatgtctaa
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