Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381442
Help
Entry
139381442 CDS
T10872
Name
(RefSeq) transcription factor COE3a isoform X1
KO
K09103
early B-cell factor
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139381442
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
139381442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COE1_DBD
COE1_HLH
TIG
Motif
Other DBs
NCBI-GeneID:
139381442
NCBI-ProteinID:
XP_070981060
LinkDB
All DBs
Position
23:56506868..56736644
Genome browser
AA seq
598 aa
AA seq
DB search
MFGIQENIGLPRGGTTMKEEPLGSGMNSVRSWMHTSGVVDANTAAQSGVGLARAHYEKQP
PSNLRKSNFFHFVLALYDRQGQPVEIERTAYVDFVEKDKEPNSEKTNNGIHYKLQLLYSN
GVRTEQDLFVRLIDSMTKQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPS
DPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNS
KHGRRARRLDPSEGTDPPYLYHAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFG
TMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGF
QRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPR
NHNQIPSLGNTASHGGMMGVNSFGSQLAVNVSETSQVGYSRQTSSVSPRGYVPSSTPQQA
NYNTVSNSMNGYGNPMSNLGVPSSPGFLNGSSANSPYGSKYQVVPSSPTMAASSVSLSTN
CSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGLQGMSGLVVPPM
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtttggaattcaggaaaatataggcttacctagaggggggacgactatgaaagaggaa
ccgctgggcagcgggatgaactcggtccgctcgtggatgcacacatctggggtagtggat
gcgaacacagccgcccaaagcggtgtgggtttggctcgggcacactacgagaagcaacca
ccgtccaacctcagaaaatccaactttttccacttcgttcttgcgctgtatgacagacaa
ggacagccggtggagatcgaacggacagcttatgtggactttgtggagaaggacaaagaa
ccaaacagtgaaaaaactaacaatgggatacactacaaactacagttactgtacagcaac
ggtgtcagaacagaacaggatcttttcgtacgattaatcgattccatgacaaaacaggct
attatctatgaaggtcaagacaaaaacccagagatgtgccgagtgcttctcacacacgaa
atcatgtgcagtcggtgttgtgataagaagagttgtggcaacaggaacgagactccttca
gaccccgttatcatcgacagattcttcttgaaattcttcctcaagtgcaatcagaactgc
ttgaagaatgcaggaaacccacgagacatgcgcagattccaggttgttgtatcaacaacg
gtcaacgtggacggtcacgtcctggcggtctcagataacatgtttgtccacaacaactcc
aagcacggcagaagggctcgacgtctagacccttctgaaggtacggaccctccttatctc
tatcatgcagctaccccctgcatcaaagccatcagcccaagtgaaggatggaccacggga
ggagccacagtcatcatcataggagataacttctttgacggtctccaagtcgtgttcggg
acgatgcttgtgtggagtgagctgattacaccccacgccatcagagtgcagaccccaccc
aggcacatcccaggagtcgtggaagtcaccctctcctacaagtccaagcagttctgcaaa
ggagctcctggacgatttgtctacactgctttgaacgagccaaccatcgactacggcttc
cagaggctacagaaggtcattcccagacatccaggagatccagagaggttaccgaaggag
gtgttgctgaagagagcagctgaccttgtggaggctctgtatgggatgccccacaacaac
caggagatcatcctgaagcgagcggccgacatcgccgaggccctgtacagcgtcccgcgt
aaccacaaccagatcccctcactgggcaacacggcgtcgcacggcggcatgatgggggtc
aactcgttcggcagccagctcgccgtcaacgtctcagaaacatcacaggtaggatacagc
cgtcaaaccagcagtgtgtcccctcgaggctacgtccccagcagcacaccacaacaggcc
aactacaacaccgttagcaacagcatgaacggctacggcaaccccatgtctaatctggga
gtacccagttcaccaggcttcctcaacggctcctctgccaactccccctacggcagtaag
tatcaagtagtgccgtcgagccccaccatggcagcctcttcggtcagcctctctacaaac
tgtagcagtacacacggcattttctcattctcacctgccaatgtcatctctgcagtgaaa
caaaagagcgcctttgcccctgttgtaaggccccaagcttctccaccaccttcttgcacc
agtgcaaatggcaatggacttcaagggatgtccggactcgttgtcccacccatgtaa
DBGET
integrated database retrieval system
