KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381499
Entry
139381499         CDS       T10872                                 
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1-like
  KO
K17908  autophagy-related protein 18
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04136  Autophagy - other
ocla04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    139381499
   04136 Autophagy - other
    139381499
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocla04131]
    139381499
   03029 Mitochondrial biogenesis [BR:ocla03029]
    139381499
Membrane trafficking [BR:ocla04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    139381499
Mitochondrial biogenesis [BR:ocla03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    139381499
SSDB
Motif
Pfam: PROPPIN Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 WD40_MABP1-WDR62_2nd WD40 WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd BCAS3_WD40 Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_Vps41 CPSF_A Beta-prop_NWD2_C Beta-prop_RSE1_2nd Beta-prop_HPS5 EIF3I
Other DBs
NCBI-GeneID: 139381499
NCBI-ProteinID: XP_070981196
LinkDB
Position
23:complement(39635637..39649753)
AA seq 444 aa
MEERKTPDGPGGPQGLISASFNQDTTSLSVGTKSGYRLFSVTSVDKMDCIHEGAECPDVY
IVERLFSSSLVAVVSLSMPRRMNVYHFKRGTEICNYSYSNNILSVRLNRQRLVVCLEESV
YIHNIKDMKLLKTLLNTPHNPSGLCALSVNHGNSYLAYPGSQTIGEIMVYDTNNLSKVTM
IPAHDSPLAALTFNASGTKLASASERGTVIRVFTIPEGQRLFEFRRGMKRYVSISSLSFS
SDAQFLCASSNTETVHIFKLEQHSPSRDGESPTWGAYVGKMFTAASTYLPSQVSDMMHQD
RAFATVRLNMFGLKNVCALSTVQKLPRLLVASSDGHLYIYNIDPQDGGECVLVRKHRLFE
GDEAPQEAQQEEKESEDGRSLPPGPSYAATVSLPSTAPSSTTLTGYSEDGGAEKGDVIPE
HEFAEGPVCLDDENEFPPVSKQTN
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggaggaacggaagacacccgacggtccgggagggcctcaaggcttgatcagcgcctcg
ttcaaccaggacaccacgtctctatcagtgggcactaagtcaggctacagactcttctct
gtcacctcagtggacaagatggactgcatccatgaaggagcggagtgtccagacgtgtac
attgtggagcggttgttctccagcagtctggtggcggtggtcagtctctccatgccccga
cgtatgaatgtctaccacttcaaaaggggaacagagatctgcaactatagctactctaac
aacatcctctcagtccggctcaacagacagaggctggtggtgtgtctggaggagtcagtc
tacatccacaacatcaaagacatgaagctgctgaagacgctgctcaacacgccccacaac
ccctcaggtctctgtgccctctctgtgaaccatggtaactcctacctggcgtaccctggc
agtcaaaccatcggagagatcatggtctatgacaccaacaacctgagcaaggtgacgatg
atcccagcccatgacagtcccctggcagccctcacattcaacgcttcaggaaccaaactc
gccagtgcttccgagaggggtacagtgatcagagtgttcaccatcccagagggacagagg
ctgtttgagttccgtagagggatgaagaggtatgtgagtatcagctcgttgtcctttagt
tcagacgcacagttcctctgtgcctccagcaacacagagacggtccatatcttcaaactg
gaacagcacagccccagtcgagatggcgagtctcctacgtggggtgcctacgtggggaag
atgttcacagcagccagcacctaccttccctcccaggtctctgacatgatgcaccaagac
cgggcctttgccaccgtacgactcaacatgttcggactcaagaacgtatgcgccttgtcc
acggttcagaagctacctcggctgctggtggcatcatcagatggacatctctacatctat
aacattgacccacaggacggaggagagtgtgttctggtcaggaaacacaggctatttgaa
ggagatgaggcgccacaggaagcacaacaggaagagaaggagtcagaggatggaaggtcc
ctcccacccgggccatcatacgctgccactgtgtccctcccctcgactgcaccctcttct
accactctcacaggctactcagaggatggaggggctgagaaaggggatgtgatccctgaa
catgagtttgccgagggtcccgtctgtctggatgatgagaacgagtttcctcccgtcagc
aaacagaccaactga

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