Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381564
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Entry
139381564 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase rfwd3.S-like isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139381564
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139381564
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139381564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
zf-RING_UBOX
zf-C3HC4
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR3_1st
zf-RING_5
zf-C3HC4_2
zf-rbx1
zf-C3HC4_3
zf-RING_11
Beta-prop_WDR3_2nd
WD40
Beta-prop_EML
zf-RING_Vps41
zf-ANAPC11
Beta-prop_WDR75_1st
zf-C3HC4_4
WD40_Prp19
Rtf2
WD40_WDHD1_1st
WD40_2
CFAP43_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
Zn_ribbon_TiaS
Beta-prop_WDR36-Utp21_1st
Beta-prop_ACSF4
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
139381564
NCBI-ProteinID:
XP_070981303
LinkDB
All DBs
Position
2:complement(54405837..54421049)
Genome browser
AA seq
717 aa
AA seq
DB search
MEVMEAMEVDLQLGGPSREPEPDVVADQVDLPIVIPDSGSETEDEADAAPCDPPRLPNTW
AFSQNRGRVEGQVGSRIRREGHIEPRVTTAATLRHRRARPGLREHSSTQTAARASSFLDF
LLRVPAANHAEGDSGSTTELSESEDEADPPGPAADPPNSAVPSNPHPNPPVAVTPPEGLY
SSDSNATTEAARTVTGNQVNPEVVSDPLASSAPALRLSQGDEGEGETCSICFEPWTTSGE
HRLATLRCGHLFGYTCIARWVKGQGQGARCPQCNKKTKRTDIVLLYARKLRALDNTEQES
MKRSLEQEHSLRRKAELESAQCRLQLQVMTDECGELHKQLQELKTLMARPGCGPSQSSAA
SLSGLFQRQDSTQVGHYVFSKAVLVSQVGGCRVLSYCEPLSCLLASQPSPHTSLVPGCGV
KKVSTLNLKACQYIPIHVKQIRGLAFNRQADSLLLSAALDNTIKLTSLMTNTVVQTYNTG
KPVWSCCWCLDNNNYVYAGLSNGSVLVYDTRDTSTHVQELQPLRSRCPVASLSYVPRAAS
SSFPCGGLIAGSLDGGCFWEQVDGTTYRPHMLPLETGGCTDIQVQPESRHCLVTYRPGRS
KPSLRCVLMELNRTPQQDAAQEPSCSCYPVQTFSAGSSCKLLTKNAVFRSPAGEGSTLVC
AGDEATNSIMVWDAGSGSLIQKLSTDLPVLDICPFEVNQGSYLASLTEKMLKIYKWE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatggaggcgatggaggtggacttgcagctggggggccccagtagggaacca
gagccagatgttgtggcagaccaggtagatctccctatcgtcatccctgactctggcagt
gaaacagaggacgaggcagatgcagctccctgtgacccaccacggctcccgaacacctgg
gcgttcagtcagaacagaggcagagtggagggtcaagttgggtccaggatcagaagggag
ggtcatattgagcccagggtcaccacagcagccaccctgaggcatcggagagccaggcca
ggcctcagggagcactcctccacccagacagctgctcgtgctagcagcttcctggatttc
ctattgcgagtccctgcagccaaccatgccgagggcgactctgggagtacgacggagctg
agcgagtcggaggatgaggcagatcccccggggccagcagcagaccctcccaactcggcc
gttccctccaaccctcatccaaaccctccagttgcagtcacgccacccgaaggcctttat
tcttcagattctaatgcaaccacagaggctgcgaggaccgtgactggaaatcaagtgaat
cctgaggttgtatcagacccactagcctccagtgcaccggcccttcgattgtcccagggg
gatgagggggaaggggagacctgctccatctgctttgagccctggaccacgtcaggggag
catcgcctggccaccctgcgctgcggacatctctttggctacacctgcatcgcccgctgg
gtgaagggccagggccagggagccaggtgtccccagtgcaacaagaagaccaagcgcacc
gatatcgtcctcctgtacgcgcgcaagctgagggctctggacaacaccgagcaggagagt
atgaagaggtcactggagcaagagcattcactgcgtagaaaggctgaactggagtcagcg
cagtgccgactacaactgcaggtgatgacagacgaatgtggggaactgcacaagcagcta
caggagctgaagactctgatggcccggcctggctgtgggccctcacagagctcagcggca
tctctctctgggctctttcagagacaggacagcacccaggtgggccactatgtcttctcc
aaggccgtgctggtgtcccaggtggggggatgcagggtgctgtcctactgtgaacccctc
agctgcctgctggcctctcagccctccccacacactagcctggtgcccggctgcggggtg
aagaaggtgagcacgttgaatctgaaggcctgccagtacattcccatccatgtcaaacag
atcagaggcctggccttcaacagacaggccgacagcctcctgctctccgctgccctggac
aacaccataaaactcaccagtctaatgaccaacacagtggtgcagacctacaacacaggc
aaaccagtgtggagctgctgctggtgcctggacaacaacaactatgtgtacgctggtctc
agtaacggctccgtgctggtgtatgacaccagggacaccagcacacatgtccaggagcta
cagccactacgttccaggtgtcctgtggcatccctgtcctatgtgcctcgcgccgcctcc
agctcgttcccatgtggtggcctcatcgcaggctctctggatgggggctgcttctgggag
caagtagacgggaccacctacagaccccacatgttgcccctggaaacaggaggctgcaca
gacatccaggtgcagccagagagcagacactgtttggtcacctacagaccagggcgctcc
aagccatcgctgcgctgtgttctgatggagctgaacaggaccccccagcaggacgcggct
caggaaccctcgtgttcctgctacccagtccagacattcagcgctggctcctcctgcaag
ctgctcaccaagaatgccgtgttcagaagcccggccggggagggttccactctggtgtgt
gccggggacgaggccaccaactccatcatggtgtgggatgcagggagtggatccctgatt
cagaagttgtctactgacctcccagtgttggacatctgtccatttgaggtgaaccagggc
agttacctggcctctctcactgagaagatgctaaaaatttacaagtgggaatga
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integrated database retrieval system
