Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381926
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Entry
139381926 CDS
T10872
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139381926
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139381926
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139381926
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139381926
Intermediate filaments
Intermediate filament-binding proteins
139381926
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SOS1_NGEF_PH
CH_2
Motif
Other DBs
NCBI-GeneID:
139381926
NCBI-ProteinID:
XP_070981888
LinkDB
All DBs
Position
23:complement(20310763..20433305)
Genome browser
AA seq
2360 aa
AA seq
DB search
MELQRATSMPGPLSPGPVFPGSHSPGPLSPSSGPGPSLASSPGPDPGYSAKQAAFNYNQL
EGRFKQLQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGEKLP
KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD
IRVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLID
FDKLKKSNAHHNLQNAFNLAEQHLGLHKLLDVEDISVDHPDEKSIITYVVTYYHYFSKMK
ALKVEGKRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRRFANSLVGVQQQL
QAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYIPRDGKLISDINKAWERLEK
SEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAAT
KKHEAIETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARR
IRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHTLVEADIAIQA
DRVKAVNNNAQKFAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAADRCARLEESRRLW
KFFWEMAEEEGWIREKEQILSSEDCGKDLTGTLRLLSQHRAFEDEMIGRAGHLQQTIKQG
EALVAADHFGADKIRERIQDIQEQWAALERLSAVRKARLEEACNLHQFQADADDIDAWML
DVLRIVSSADVGHDEFSTQALVKKHKDVAEEIASYRPVIDALHEQSKTLPGEQTGSEEVQ
GRLSGIEERYKEVAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKL
EDLEVVQHRFESLEPEMNNQASRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFR
DLVDLKKDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGM
ERDLTAIEDKLGELGKEGEHLAAEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEA
SKLQQFLRELDDFQSWLSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEVDYQKM
RDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQA
EAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKINAVVDTGRRLVSDKNI
NADRIQEKVDSIDERHQKNRLAASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDM
SYDEARNLHSKWLKHQAFMAELQSNKEWLDEIEKDGMQLIAEKPETEAMVKEKLAALHKM
WDDLESTTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKK
QQMLESQVEVRQKEVEELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLKKRKGNL
MASREIHQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRC
DDIFERSQQVLKDDDNSPSGEGIRQRLADLRRLWAQILEETAKRHGRLEEAHKAQQYYFD
AAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRGLTA
AGHPESERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVV
AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHADAATIAEWK
DGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVE
TLQRMHTTFEHDIQALGTQVRMLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEAC
DGRRVRLLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEI
DARNDSFTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVH
QFGRDAGVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLT
TMELLEVRRQQEEEERRRNPPPAETQTDTASPQKKEGEQVSLNGLPSDQDSPRDNGEGSD
IVNGVAEPSPGGSPSAARKGKPSQAATLPAKSLDSTPANQMEGLLHRKHEWEGHNKKASS
RSWHNVYCVINNWEMGFYKDIKSASQGIPYHSEIPISLKDAACEIALDYKKKKHVFKLKA
TDGNEYLFQAKDDEEMNSWMEAISSAASSDKTEMTPSSHSTPASSRAQTLPASVALATES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctacagagggcgaccagcatgcctggccccttgtccccagggcctgtctttcca
gggtcccactccccagggcccctgtccccttcctctgggcccggcccctctcttgcctcc
agccccggccctgatccgggctactctgctaaacaggctgccttcaactacaaccaactc
gagggccgatttaagcagctgcaagatgagcgtgaagcggtgcagaagaagaccttcacc
aagtgggtcaactcccacctagccagagtgtcctgcaggatcactgacctctatatggac
ctgagagatggacgcatgctcatcaaactactggaggttctctctggggagaaactgccc
aagcccactaaggggcgcatgcgtatccactgcctggagaacgtggacaaggccctgcag
ttcctcaaggagcagagggtccacctagaaaacatgggctctcatgacatcgtcgacggc
aaccaccgcctcacccttggcctcatctggaccatcatcctccgattccagatccaggac
atcagagtggagacggaggataacaaggagaagaagtcggctaaagatgctctgctgctc
tggtgccagatgaagaccgcaggatatcccaacgtaaacattcacaacttcagcaccagc
tggagggatggcatggctttcaacgccatcctccacaaacacagacctgacctgatagac
tttgacaagctgaaaaagtcaaatgcccaccacaacctgcagaatgccttcaacctggca
gagcaacacctgggcctccacaagctactggacgtagaggatatcagcgtggaccaccct
gatgagaagtccatcatcacctatgttgtgacctactaccactacttctccaagatgaag
gccctgaaggtggagggaaaacggattgggaaggtgctggacaatgccattgagaccgat
aacatgattcagaaatatgagagtctggcctctgacctcctggaatggattgaacagacc
atcatcatcctcaacaaccgcaggtttgccaactccctagtgggggtgcagcaacagctc
caggccttcaacacctaccgtaccgtcgaaaagccgcccaagttcactgagaaaggcaac
ctggaggttctcctcttcaccatccagagcaagatgagggccaacaatcagaaggtctac
atcccgcgggacggaaaactcatctcagacatcaacaaggcctgggagaggctggagaag
tcagagcatgagagggagctggctctaaggactgagctgattcgtcaggagaaactggag
cagctggcccgccgctttgaccgcaaagccgccatgagagagacctggctaagtgagaac
caacggctcgtctcacaggacaactttggctttgacctgcaggcggtggaggccgccacc
aagaagcacgaggccatcgagacggacatcggcgcctacgaggagcgtgtgcaagcagtg
ctctccgtggccaaggagctggaggcagagaactaccatgacatcaagcgcgtgacagcg
aggaaggacaacgtgctgcgtctgtgggagtacctgttggagctgctgaaggcccggcgc
atccggctggagatgaacctgggcctgcagagggtcttccaagagatgctttacatcatg
gactggatggatgagatgaagatgctgctgctgtctcaggactatgggaaacacctgctg
ggagtggaggacctgctgcagaagcacactctggtggaggctgatattgccatccaggcc
gaccgcgtcaaagccgtcaacaacaacgctcagaagttcgccattgatgcagagggctac
aagccctgtgacccccaggtgatccgggaccgagtggcccacatggagttttgttacgca
gagctgagccagctggccgccgatcgctgcgcccgcctggaggagtcccgccgcctctgg
aagttcttctgggagatggccgaggaggagggctggatccgtgagaaagagcagatcctg
tcctcggaggactgcggtaaggatctgacgggcaccttgcgtctgctgagccagcaccgc
gccttcgaggatgagatgatcggccgcgccggccacctgcaacagaccatcaagcaggga
gaggcgctggtggccgccgaccacttcggagccgacaagatccgtgagcgcatccaagac
atccaggagcagtgggcggccttggagaggctatctgccgttaggaaggcccggctggag
gaggcctgcaacctgcaccagttccaggctgacgccgacgacatcgacgcctggatgctg
gatgttctccgcattgtgtccagtgccgacgtgggccacgacgagttctccacccaggcc
ctggtcaagaagcacaaggatgtggccgaggagattgccagctaccgacccgtcatcgac
gccctgcacgagcagtccaaaaccctgcccggggaacagactggctcagaggaggtgcag
gggcgcctgtcgggcatcgaggagcgctataaggaggtggctgagctgacccggttgagg
aagcaggccctacaggatgccctggccctctacaagatgttcagcgaggcggatgcctgt
gaggtgtggatcgatgagaaggagcagtggctcaacagtatggagataccagagaaactg
gaggatctggaagttgttcagcacaggtttgaaagtctggagccagagatgaacaaccaa
gcctcacgcgttgccgtggtaaaccagattgctaggcaactcatccacagtggtcacccc
agtgaaaaggagatcaaagcccaacaggacaaactcaacaccagatggagtcagttccgt
gacctagttgacctgaagaaagactccctcaactcagctctgggtgtacagaactaccac
ctggagtgtaacgagaccaagtcgtggatccgcgagaagaccaaggtgatcgagtccacc
caggagctgggcaatgacctggccggggtcatggccctgcagcgcaagctcaccggcatg
gagcgtgacctgaccgccatcgaggacaagctaggagaactggggaaggagggggagcac
cttgcagccgagcaccctgaccaggcccagggcatcatgggtcgcctgggggagatcaca
ggagtgtgggacgagatgaagggcaccctgaagaaccgcgaggagtccctgggcgaggcc
agcaagctgcagcagttcctccgggagctggatgacttccagtcatggctgtccaagacc
cagacggccatcgcttcagaagacatgcccaacacactgacggaggccgaaaagctgctg
gcgcagcacgagggcatcaagaacgagatccgcaactatgaagtggactaccagaagatg
agggacatgggggaaatggtgacccagggccagacggacgcccagtacatgttcctgagg
cagaggctgcaggccctggacacaggctggaacgagctgcacaagatgtgggagaaccgt
cagaacctgttgtcccagtcccatgcccaccagctgttcctcagggataccaagcaggct
gaagccttcctcaacaaccaggagtacgtgctggcccatactgagatgcccacgactctg
gagggggcagagggagccattaagaagcaggaggacttcatgaccaccatggacgccaac
gaggagaagatcaatgccgtggtggacaccggacgcagactggtcagtgacaaaaacatc
aatgctgaccgcatccaggagaaagtggactctatcgatgagagacatcagaagaaccgc
ttggcggccagtgagcttctctgtaagctgaaggataacagagacctgcagaagttcctt
caggactgccaagagctgtccctgtggatcaatgagaagatgctcacggctcaggacatg
tcgtacgacgaagccaggaacctccacagcaaatggctcaaacaccaggccttcatggcc
gagcttcagtccaacaaggagtggctggacgagatcgagaaggacgggatgcagctgata
gctgagaagccggagaccgaggccatggtgaaggaaaagctggcagcgctccataagatg
tgggatgaccttgagtccaccacccagactaaggccaagtgtctgtttgacgccaacaag
gctgagctgttcacccagagttgtgccgacctggacaagtggctggtgggagtggatgga
caaatccaatcagatgactacggcaaagatctgaccagcgtcaacatcctgctcaagaaa
caacagatgctggagagccaggtggaggtgcgtcagaaggaggtggaggagctgcagagc
caggcccaggtcctcagccaggaggggaaggacacagatgaggtggacggccagcgccgc
atcgtggagaagaagttccagcagctgctagacccactgaagaagaggaagggaaacctc
atggcctcccgcgagatccaccagttcaacagagacgttgaggatgagatcctctgggtt
gaagagagaatgccactggcaacatctacagaccacggaaacaacctgcaaacagtccag
ttactcatcaagaaaaaccagaccctgcaaaaggagatccagggccaccagccgcgctgt
gacgacatctttgagcggagtcagcaggtgctgaaggatgacgacaacagccccagcggc
gaggggatccgccagcggctggccgacctgcggcgcctgtgggcccagatcctggaggag
acagccaaacgccatggacgcctggaggaggcccacaaggcccagcagtactactttgat
gctgccgaggctgaggcctggatgagcgagcaggagctctatatgatgtcagaggagaaa
gccaaggatgagcagagctccgtggccatgctgaagaagcaccagatcctggagcaggct
gtggaggactatgctgagactgtccaccagctctccaagaccagcaggggcctgacggcc
gccggacacccagaaagtgaacggatcggcatgcgtcagtcccaggtggataagctgtac
gcggggctcaaggacctgtcggaggagaggagggggaagttggacgagaggttccgtctt
tttcagctcaacagggaggtggatgatctggagcagtggatcgctgaaagggaggtggtg
gctgggtcacatgagctgggacaggactatgaacatgtcacgatgcttcaggagcgtttc
cgtgagtttgctcgcgacacgggcaacattggtcaagagcgtgtggacactgtcaaccag
ctggcggacgaactcatcaactcgggccacgccgacgcggctaccatcgccgagtggaag
gacgggctgaatgaggcgtgggccgacctgctggagctgattgacacacgcacgcagatc
ctggcggcgtccttcgagctgcacaagttctaccacgacgccaaggagatcctcaaccgc
atcctggacaaacacaagaagctgcctgaggagctgggccgggaccagaacacagtggag
accctgcagaggatgcacaccaccttcgaacacgacatccaagccctggggacacaggtg
aggatgttgcaggaggatgctgtgcgcctgcagtctgcctatgccggagacaaggctgat
gacatccaaaagagagagggtgaggttttggaggcctggagaacactgctggaggcctgt
gacggccgcagggtcagactgctcgacaccggcgacaagttccgtttcttcagcatggtc
cgagacctcatgctctggatggaggacgtcatccgcctcatcgaggctcaggagaagccc
agggacgtgtcgtctgtggagctcctgatgaacaaccaccagggcatcaaggctgagatc
gacgcccgtaacgacagctttaccaactgcatcgagctgggcaagtccctgttggcacga
aaacactacgcattagaggagatcaaagagaagttactacagttgacggacaagaggaaa
gacatgattgacaagtgggaggacagatgggagtggcttagattggttctggaggtgcac
cagtttggaagggacgcgggtgtggccgagtcgtggctgctgggacaggagccgtacctg
tccagcagggagatgggtcagaacgtggatgaagtggagaaactcatcaagagacacgag
gcctttgagaagtcagctgccacctgggaagagcgcttctctgcgctggaacggctgact
acgatggaattactggaagtgagaagacagcaagaggaggaggagaggaggagaaatccc
ccacctgcagagacccagacggacactgcatcgccacagaagaaggagggtgagcaagtg
tctctgaatggactgccatcggaccaggactcccctcgggacaatggggagggaagtgac
attgtaaatggggtggcggaacccagcccaggcgggtcgcccagtgcagcacgcaagggc
aagcccagccaggctgccacactcccagccaagtccctggactcaaccccagccaaccaa
atggaaggcctcctgcaccgcaaacatgagtgggagggtcacaacaagaaggcatccagc
agatcctggcacaatgtgtattgtgtgatcaacaactgggaaatgggcttctacaaagac
attaagagtgccagccagggcatcccctatcacagcgagatccccatcagcctgaaggac
gctgcgtgtgagatcgccctcgattacaagaagaagaagcatgtgttcaaactgaaagct
acagatgggaatgagtatctcttccaagccaaagatgacgaggagatgaactcgtggatg
gaggccatctccagtgctgcgtcctctgataagaccgagatgacccccagcagccatagc
acccccgcctccagccgagcccagaccttgcccgcctctgttgccctggcaaccgaatcc
agcccaggcaagcgcgagaaagacaaagaaaaacgcttcagccttttcagcaaaaagaag
tag
DBGET
integrated database retrieval system
