Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382006
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Entry
139382006 CDS
T10872
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42-like isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139382006
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139382006
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
139382006
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
139382006
Ubiquitin system [BR:
ocla04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
139382006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
139382006
NCBI-ProteinID:
XP_070982016
LinkDB
All DBs
Position
23:38879745..38905925
Genome browser
AA seq
1408 aa
AA seq
DB search
MTIVDRSSEKSDLESVGCKRSGSLNFPGGDGNGMDSGCSSWGAGGPSSSDTTRVKTGGCM
GPTPGATVNSSSADRPKEQVVLTSGDGIALPQKVLFPAERLSLKWNQVHRIGSGLQNLGN
TCFLNSTLQCLTYTAPLTNYMLSREHSKTCHEPGFCMMCTMQNHITQVFANSGNVIKPIG
VLNELKRIAKHFRFGSQEDAHEFLRYTVDAMQKSCLPLNKLDRQTQATSFIHQVFGGYLR
SRVKCFNCKAVSDTFDPYLDVALEIKTAPSITKALEQFVKPEQLDGENAYRCAKCKKMVP
ASKRFTIHRSANVLTISLKRFANYNGGKIAKDVRYAECLDLRPFMSQSHGEPQVYVLYAV
LVHSGFSCHAGHYYCYVKASNGQWYQLNDSSVLVSDIRSVLNQQAYVLFYIRSPDLKNGG
DYNHTCRTPGPLGQLSPRPILTPRVNIGPRHTSTGFIGPQLPPHMAKNIFRVNGNGLLRD
YPSGSKPSTSSDNSMGKTSYSPLATSSSHPLNRPTGIPDPAKRQKLSFFIGQGKQIRPSS
SSYAQLSSSSQSTSDMSTPQDPRINGTPSVNRNGHGASFLVPYGQESSEESDQEGGSGLG
NGTAKPYVNGRKGETVYGPVPRVLTLKTNGISNGQATMHRNGTNSFSKLSQNGHHNIKHP
EKIHGSGHAMSPGLGSSMPNGAEAHPSGPSKEVYCTTPSQASTCQGLHSADIDSRLSLTP
EKRAKTHSGPLPHHAPSTAAKPPSSLADVGAKPLTDALRESSSNPGVLFLQPTPRSLSTP
VAPVLSGPGLGATKDLGAPHGGSGEDIRETQNSPAVGLDGKPSSRDGRDQMYSSDREQKS
NLNSSDREEKSGLNSSDREEKSGLNSSDREEKSGLNSSDREEKSGLNSSDREEKGGLNSS
DREEKGGLNSSDREEKGGLNSSDREEKGGLNSSDREEKGGLNSSDREEKGGLNSSDREEK
GGLNSSDREEKGGLNSSDREQKSGLNSSDREEKGGLNSSDREQKSGLNSSDREEKGGLNY
SDREQKGGLNSSDREQKSGLNSSDREEKSGLNSSDRDKEKGRLHSSDCDRDRDRLYSSDR
DKDGEGDRYHRDRSRERNWDHDSDHYRHRRDHRDRDHHRSYRDRSLSRDRHRNWESEAFL
SQRRYHPRERDRDRCHHHYHHRTSKDRNRDRREHSHHSLPHREEPHGRSRWRDEGKERCY
YPSQETPLPTPLSSSTKPSQSLPALVKRPEPHREERKDSSEERRAKKPKKSKKKKSKDRE
RHRENRTFDVNSSDRAADGSSSSKHNKSRRYDTDTEDEKSGGEIHSTQSPERHRDPNAPR
EGRRASSSDDERASKKQRYQDDGYDNSYPKKRHRADDNDRSFSSRDGSPTAAPQNTSHFN
KHTGNGLGQPNGNSHECSTNGLYNDLRQ
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagagaaatctgacctagagtcagtcgggtgcaagcgc
tcaggatcgctgaactttcccggcggtgacgggaacgggatggacagtggctgctccagc
tggggggcggggggcccctcgtcctccgacaccaccagggtgaagacagggggctgcatg
ggtcccacccctggagccacagtcaacagcagcagtgcagacaggcccaaggagcaagtg
gtgctgaccagtggggacggcatcgccttgccccagaaggtgctgttcccagccgagcgg
ctcagcctgaagtggaaccaggtccaccgcatcggatcaggtctccagaacctgggaaac
acctgcttcctcaactcgactctgcagtgtctcacctataccgctcccctcactaactac
atgctgtcccgggagcactctaaaacatgtcatgagcctgggttctgtatgatgtgcaca
atgcagaatcacatcacccaggtcttcgccaactctgggaatgtcatcaagcccatcgga
gtcctcaacgagctcaaacggattgcaaagcatttccgttttggcagccaagaggacgcc
catgagttcctgcggtacacagtggacgctatgcaaaagtcctgcctgcctctaaacaaa
ttggacaggcaaacgcaagcaaccagtttcatccatcaagtctttggagggtatctacgg
tccagagtaaaatgtttcaactgcaaagcggtctctgacacgtttgacccttatttggat
gttgctttggaaataaagactgctcccagtatcacaaaggctctggaacagtttgttaag
cctgagcagctagatggagagaatgcctacagatgcgctaagtgtaagaagatggttcca
gcctctaagagattcaccatccaccgcagcgctaatgtgctcaccatctcactgaagcga
ttcgccaactacaacgggggcaagatcgctaaggatgtacggtatgctgagtgcctagac
ctgcgtcccttcatgtctcaatcccacggcgagccccaggtctacgtgctctatgctgtc
ctggtgcactctggcttcagctgccacgctggacactactactgctacgtcaaagctagc
aatggccagtggtaccagttgaatgactcctctgtgttggtcagtgacatcaggtcagtc
ctcaaccagcaggcgtacgtcctcttctacatcaggtcacctgatctgaagaatggaggg
gactacaatcacacgtgccggaccccggggcccctcggccagttgtccccccgccccatc
ctcacaccccgggtcaacattgggccacgacacaccagcactggcttcatagggccacag
ctgcccccacacatggccaagaacatatttcgcgtcaatgggaacggcttgctaagggac
tacccctctggctctaagcccagcaccagcagtgacaacagcatgggcaagactagctac
agcccgctcgccacctcttcctcccatcctctcaaccgtcccacaggcatccctgaccct
gccaagcgccagaagctctccttcttcattggtcagggcaaacagatccgcccctcatca
tcctcttatgcccagctgtcctcttcgtcacagtctacatcagacatgtctacgccccag
gatcctcgcattaacggcactccctccgttaacagaaacggtcacggggcgtcgttcctg
gtgccgtacggtcaggagtcgtctgaggagtcggaccaggagggaggcagtggtctgggt
aacggcacggctaagccttacgttaacgggaggaagggagagaccgtctacggccccgtc
cccagagtgctgaccctcaagaccaacggcatcagtaatggccaggctaccatgcaccgt
aacgggaccaacagcttctccaaactcagtcagaacggacaccacaacatcaaacaccct
gagaagatccatggtagcggtcatgcgatgtcgcccggtttgggttccagcatgcctaat
ggggcggaggctcaccccagtggcccaagcaaagaggtgtattgcaccacccccagccag
gccagcacctgtcaaggcctgcacagtgccgacatcgacagccgcctctccctcacccca
gagaaaagggctaaaactcactctggccccctccctcaccacgcaccatcaaccgctgct
aaacctccatcctcattggctgatgttggagctaaaccacttaccgacgccttgagggaa
tccagctccaaccctggagtcttattcctccagcccaccccccgctccctcagtacccca
gtcgccccagtcctctccggaccaggcctgggagccacgaaagatctcggagccccacac
gggggatctggggaggacatcagggagacccagaacagcccagctgtagggctggatgga
aagcccagctccagagatggaagagaccagatgtactcttccgatcgggagcagaaaagc
aatttgaactcttccgatcgggaggagaaaagcgggttgaactcttccgatcgggaggag
aaaagcgggttgaactcttccgatcgggaggagaaaagcgggttgaactcttccgatcga
gaggagaaaagcgggttgaactcttccgatcgggaggagaaaggcgggttgaactcttcc
gatcgggaggagaaaggcgggttgaactcttccgatcgggaggagaaaggcgggttgaac
tcttccgatcgggaggagaaaggcgggttgaactcttccgatcgggaggagaaaggcggg
ttgaactcttccgatcgggaggagaaaggcgggttgaactcttccgatcgggaggagaaa
ggcgggttgaactcttccgatcgggaggagaaaggcgggttgaactcttccgatcgggag
cagaaaagcgggttgaactcttccgatcgggaggagaaaggcgggttgaactcttccgat
cgggagcagaaaagcgggttgaactcttccgatcgggaggagaaaggcgggttgaactat
tccgatcgggagcagaaaggcgggttgaactcttccgatcgggagcagaaaagtgggttg
aactcttccgatcgggaggagaaaagcgggttgaactcttccgatcgggataaggagaaa
ggccgactacattcttcggactgcgatagggatcgagaccggctgtactcttctgaccgg
gataaagacggagaaggggataggtaccaccgggacaggagccgtgaacgcaactgggac
catgactcagaccactaccggcaccggcgagaccaccgagacagagaccaccaccggtcg
taccgggaccgctcgctcagccgggacagacaccggaactgggagtctgaggcattcctc
tcacagcgacgctatcaccccagagagagggacagggaccgctgtcaccaccattaccac
cacagaacgagtaaggacaggaatagggacaggagggagcacagccaccacagcctccca
cacagagaggagcctcatggacgctcaaggtggagggatgaaggtaaagagaggtgttac
tacccttcacaggagacccctctgcccaccccactgagctccagcaccaagcccagtcag
tccctcccagccctggtgaaacgacccgagcctcacagagaggagagaaaggacagctct
gaggagcgtcgggccaagaaacccaagaagagcaagaagaagaagtccaaggacagagag
aggcaccgagagaataggacctttgacgtgaattcctctgacagggcagccgacggcagc
agttcctccaaacacaacaaaagtagaaggtacgacactgacacggaggatgagaagtca
gggggtgagatccactctacccagagtcccgagaggcaccgtgaccccaatgccccccgg
gagggtcgcagggcaagcagcagcgacgatgagagggcgagcaagaagcaacgttaccag
gacgatggctatgacaacagctaccctaagaaacgccatcgcgccgatgacaacgaccgc
tccttctcctctcgtgatggatcaccaacagcagctcctcaaaacacatcacacttcaac
aaacacacaggtaatggcttaggtcaacccaatggaaactcccacgaatgttctaccaat
ggactgtacaatgaccttagacagtag
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