Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382051
Help
Entry
139382051 CDS
T10872
Name
(RefSeq) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139382051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139382051
03021 Transcription machinery [BR:
ocla03021
]
139382051
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
139382051
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139382051
RNA polymerase III system
TFIIIB
139382051
RNA polymerase I system
SL1/TIF-1B
139382051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-GeneID:
139382051
NCBI-ProteinID:
XP_070982112
LinkDB
All DBs
Position
23:43592520..43601570
Genome browser
AA seq
299 aa
AA seq
DB search
MEQNNSLPPFQGLASPQGAMTPGMPIFSPMMPYGSGLTPQPVTNTNSLSLLEEQHRQQQQ
QQASTQQGGVSGGSGQTPQLYHSQTVTTTTLPGNTPLYTTTPLTPMTPITPATPASESSG
IVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV
CTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQF
SSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRKTT
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaacaacagtttgcctcctttccagggtcttgcctcccctcagggggcaatg
acacctggaatgcccatcttcagccccatgatgccttatggcagtggtctgactccccaa
cctgtgacgaacaccaacagcctgtctctcctggaggagcagcatcggcaacaacagcag
cagcaggcttcgactcagcagggtggggtgtcagggggctcgggacagacgccacagctt
tatcactcccaaacggtcaccaccaccacactgccaggaaacacccctctctacaccact
acaccgctaacccccatgacacccatcacacctgccacacctgcctctgagagctctggg
attgtcccacaactacagaatatcgtatccactgtgaacttgggctgtaaacttgactta
aaaacaatagcactccgagctagaaatgctgagtacaatccaaagcgatttgctgctgtt
atcatgagaatacgagagccaagaacaactgcacttatcttcagctctgggaaaatggtg
tgcacaggtgccaaaagtgaagagcagtcccgcctggcggccaggaaatatgcccgagtc
gtgcagaagttgggcttcccagccaaattccttgatttcaagatacagaacatggtgggc
agctgtgatgtcaaattccccattcggttagagggacttgtactaactcaccagcagttt
agcagttatgaaccggagttgttccctgggctaatctatagaatgatcaaacccagaatt
gtcctgttgatattcgtttcaggcaaagttgtattaacaggtgcaaaggtgagaggagaa
atttatgaagcatttgaaaacatctacccgatcttgaaaggattcaggaagacgacgtaa
DBGET
integrated database retrieval system
