KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382055
Entry
139382055         CDS       T10872                                 
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like isoform X1
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     139382055
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    139382055
SSDB
Motif
Pfam: TNRC6-PABC_bdg RRM_occluded RRM_1 PP1_bind
Other DBs
NCBI-GeneID: 139382055
NCBI-ProteinID: XP_070982115
LinkDB
Position
23:36859899..36916027
AA seq 2100 aa
MEDKKRKKEDKRKREASQKVAEQKNKVPELTKPSSTQSPAAPSSACPSPGPTPSASPSPA
TAAAGVAPPQGGNNAKRPAVANGQPPAAGTQASQRYMPREVPPRFRCQQDHKVLLKRGQP
PLSSMLLGGGTGPGGGGGDCPNATMAAASDSSPGYVGPAAPSLPLTSSSSSIAASSTTSS
NYANSTWGVGSGSLPSSQGREKVIVDGSDLEEWPSIAVGDGNGAGGGEASGTGSGSASSG
EGGGGVPNSSALRKGGDPGSPPSPTSSFSTPNECMLSVSVVWGSAASQGPPGTSVPSIPK
ASPLPMGPDGSLGGSGVIPGANFNPNANPSAWPALVQQDGAGVASSEGAPPPSLLQSLAG
SLSAPGLGNPPLAVNQSAHQHQLHQMQSRDREHTSDGGWGGAALETGAGPKNEGTGVGAD
TDCGGGGNGGENLAASQTSSSSWGGQPFPAANSKTGASRTDGWEGGAAEGGGGSGWKYSA
QGGNGGKSWGAGRGGSTQTPGVSQGGGAGGERGSSVGDWGGNSGGMGGGGNPGGEAGGVG
GRSSSSSSSGGSNPPAASSSPTTSTTTTRAWDNQKGDGVAGGDTGEWGGGKGGRGGNSSS
GGGNSRGSGNQHHGYGHHRYSHPPPPNPDVALQAMLSRSDLDPRVLSNTGWGQTQIRQNV
AWDLEPGKGGSGSSASSQNASPPMGPSSQYSTGSATTTDPMAPTPLPGSAPNLNSNPSLG
TPGGSGEGWEVGNNGSSSGSNSMPSQGPPPLGSNMKNPPGVTQSGSMTTGAGIGGGLGPG
QGKPTGGWGGVGPGESQGKGWGNEGSEWGCGRERSRGGGGGGWGDNGQQGNQGGGGVGGW
GGGQEEKGTGGGWKEMGRDGGGWGGQRDRGGGDWGEREPKSSGGGWGEDRKGGGNSGGGD
SEVGTWGSWDEGAPRRSWGAGGTGGGGGGGVGGDMGCTKPHQGRWGGGGKMHPSPMPNSQ
TASVKGAMALQQHSQPPPQQALEPGGGGWVRQPGAQHQNQSSSGWIAGPIPSGPGGGEGP
ESSGWEEPSPQFISRKMDIDDGTSAWGDPSQFNKKTVNLWEKNGSPAGHQPEMQGQGAGP
PTQQQQGLPALQQPGPGRQPTGMGGRDINPGPGRQPTGMGGRDINPGPGRQPTGMGGRDI
NPGKAPGMAPSSGWDGGSPSDPPVDNGTAAWGKPTETPTGWEDPGKTTSGWGNPSPNPIK
SAGSKSMQEGSWGEGDQGSVAASRHSSWEEEEEGGGGVWSSAGSQGSSSSYNSGGWGQSH
GGKKPNKAPLKSGGGDSWMNSMNKQFSNMGLLGDDPSGRPLDLAPGPSQDKKMEGEKRGM
GLNDYNGEMRKGGQRGVGGGGMVYRSPGSKEIGPGDPGPCYDKQPLPFTNQDGCLGEEYS
PPTVYKPSPLYSHTIPPRQGGHNMFGGCGGGMPQSRHQPGVPPINTSAGIRAQVPHQYLS
PQVPGSMLKQVAPPSAGVGGVGGVSGVAGVGGGVFPPQLSPQHIAMLSGIYPPHIQFQLA
CQLLLQQQQNPQQLTSPQQLQQLLQNQRKFPQNLRQQADPQQLARIVAVLQQQRQQQGVG
GGAKLSPSDLGGGGPKLPMTDSLPHPGMGGSVDLHQKTQGYSGYGGGVNLSGLDMGGSVM
GGPGGMKDMGGQQSRFKWMMEGHSPAPSPPESLNKNGPMSTPMRRGGSPYSQYDMMGGEG
LGMPLQRDNWHRTPGNKMGSKPQGTSSWPPEFQPGVPWKGIQSIDPESDPYMTPGSMMGI
PGPSSLNDTEHQLLRDNTEANPSLNTLLPSPGAWPYSASDSPLNNAHNSAKYTEYKTSWP
PEPIGHNKMWKTNRNQQSQQLPRPPPGLTNQKQASPSRGPWQARGWGSSSGSQETRYGPG
SAWSDGGTSRGSCWLVLCNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSTPQE
AAKAQSALHMCVLGNTTILAKFVSEEEVARYFAHSQAGGASGSQGGPTGTGAVGANSSGG
SGERERDRTRGGGESSAPGGGGSSGPVSSGWQSLDSTGGCLDTTPAQGPGLSMFAQWSSN
GAGVAGGVEPSRQGLWGGMGGGGYPSSSMWGSPAIEDPHQMGSPAALLPGDLLGGGADSI
NT seq 6303 nt   +upstreamnt  +downstreamnt
atggaagacaaaaaaaggaagaaagaagacaaaaggaaaagggaagcctctcagaaggtt
gcagagcaaaaaaacaaagtgccagaattgacaaagccctcgtccacccagtctcctgcc
gcccccagctctgcttgccccagccctggacccaccccctcggcgtccccctcccctgcc
accgcggctgcaggcgtcgcccccccccagggtgggaacaatgcgaagcggccggcggtg
gccaacggacagccccccgcagcaggcacccaggcctcccagcgctacatgccccgcgaa
gtgcccccgcgattccgctgccagcaagaccacaaagtgctactgaagaggggccagccg
ccgctgtcctccatgctactggggggaggcaccgggccagggggaggagggggagactgc
cccaatgcaaccatggctgctgcctcagattctagtccaggctatgtgggtccagctgca
ccctcactgcccctcacctcatcctcctcatcaatcgctgcttcttctactacttcttcc
aattatgcaaattccacgtggggggttggctctggcagcctgccctcttctcagggcagg
gagaaggtcatcgtggacggctcagacctggaggaatggcctagcattgccgttggcgac
gggaatggagcaggaggaggtgaagcttcggggacaggaagtggtagtgcttcgtcgggt
gagggcggtggtggagtgccgaacagcagtgccttgcggaaaggtggcgatcctggcagt
cccccatcacccacttcctcgttctcaacgcccaatgaatgtatgctgtccgtcagtgtg
gtgtggggatctgctgcctcacagggtcctccagggacatcagtgccctccattcccaaa
gcctcccctctgccaatgggccctgatggatcccttggtggcagtggggtgatccctggt
gccaacttcaacccaaatgccaacccttccgcctggcctgctttggtgcagcaggatggg
gctggggtagcttcctctgagggtgccccccccccttcccttctccagagcctggctggg
tctctgtctgccccgggcctggggaacccacctctagctgtgaatcaatccgctcatcag
caccaacttcaccaaatgcaatccagagacagagagcacacgtcggatgggggttggggt
ggagcggcactggagaccggagcaggaccaaaaaacgaggggacaggggtgggagccgat
acagactgtgggggaggaggcaatggtggagagaacctcgctgcttcccaaacctcatcc
tcctcttggggaggccagcctttccctgctgctaactccaaaacgggtgcctcaaggact
gatggttgggaagggggagctgctgagggtggtggaggctcgggatggaagtacagcgct
caggggggtaatggagggaaatcctggggcgctggaagggggggtagcactcaaaccccc
ggggtatctcagggagggggtgcaggaggggagcgagggtcttcagttggagactgggga
ggtaattcaggtgggatgggtggaggtggaaatccaggaggggaggctggtggtgtcgga
ggccgcagcagtagcagcagcagcagtgggggcagcaacccccctgccgcctcttcctct
ccgacaacatccaccactacgacaagagcttgggacaatcagaagggggacggagtggca
gggggggacacaggggagtggggggggggcaagggtggtagaggaggtaattcatccagc
ggtgggggaaactccagaggcagcggcaatcagcaccacgggtacggtcaccaccggtat
tcccaccccccaccgcccaaccctgacgtggccttacaggcaatgctcagccgcagtgac
ctggacccacgcgtcctctccaacacgggctggggccagacccagatcagacagaatgtg
gcctgggacctagaaccaggaaaaggagggtctgggtcgtctgcttcatcccaaaacgct
tcacctcccatgggtccatcttctcaatactccactggctctgctacaactactgatcca
atggctcctacccctctccctggctcagctcccaacctgaactccaacccttccctgggg
acccctggtggctccggggagggctgggaggttggtaacaacggcagcagtagtggcagc
aactccatgcccagccaagggccacctcccctaggctccaacatgaaaaaccctcctggc
gtcactcaatctgggtcaatgaccactggagcaggtataggtggcggccttggaccaggc
caggggaagcctacaggaggctggggtggggttggaccaggggagagtcaaggaaaagga
tgggggaacgaagggtctgagtggggttgtgggagggaacgaagtagaggtggtggtgga
ggaggttggggagataatggacaacagggtaaccaaggtggaggaggagttggtggctgg
ggaggtggccaggaggagaaggggacaggaggaggatggaaggagatggggcgggatgga
ggagggtggggtgggcagagggacaggggtgggggagactggggggaaagagaacctaaa
tccagtggtggaggatggggagaggataggaaaggtggaggtaactccggtgggggagac
tcagaagttggtacgtggggtagctgggacgagggagccccgaggagatcctggggggca
ggaggtacgggtgggggcggcggaggaggggtggggggggacatgggatgcaccaaaccc
caccagggacgttggggtggaggtgggaagatgcacccgtcaccaatgccaaacagccag
acggcttctgtgaaaggcgccatggcactgcagcaacattcgcagcccccaccgcaacaa
gcgctggaaccgggaggagggggctgggtgagacaaccgggtgcccagcaccagaaccaa
agcagttcgggctggattgccggacccatccccagtggccctgggggaggggaaggacca
gagtccagcgggtgggaggaaccttcaccgcaattcattagccggaagatggacattgac
gatgggacatcagcttggggagaccccagccagtttaataagaagactgtcaacctgtgg
gagaagaatggctctcctgctggtcatcagccggaaatgcagggccagggagcaggacca
ccgacccaacagcagcaggggctaccagctctacagcagcctggacctgggaggcagccc
actgggatgggaggtagggacatcaaccctgggcctggaaggcagccaactgggatggga
ggcagggacatcaaccctgggcctgggaggcagcccactgggatgggaggcagggacatc
aaccctgggaaagctccagggatggctccatcgtctggctgggacggtggctctccctcg
gaccccccggtggacaacggcactgcagcctgggggaaacctactgagacccccaccggc
tgggaagaccctgggaagaccacctctggctggggaaacccctcacccaaccccatcaaa
tctgcaggttcaaagtctatgcaagaaggaagctggggtgagggcgaccagggctctgtg
gcggcctctcgtcactccagctgggaggaagaggaggagggaggtggaggggtgtggagc
agcgctgggtcccagggtagcagctcttcctacaacagtgggggctggggccaaagtcac
gggggcaagaagcccaacaaggctccactgaagagtggaggaggagactcctggatgaac
tccatgaataaacagttctccaacatggggctcctgggtgatgatcctagcgggcgacct
ctggacctggcccctggtccttctcaggataagaaaatggagggagagaagcgagggatg
ggcctgaatgactacaatggagagatgcgtaaaggagggcagagaggagtgggaggagga
ggcatggtctaccgttcacctggttccaaagagattgggcctggcgaccctgggccttgt
tatgacaagcagcccttgccgttcaccaatcaggatgggtgccttggggaggagtactct
ccacccactgtctacaaaccctcccccctctacagccacactatcccccctagacaaggt
ggtcataacatgtttggcggctgcggtggtgggatgccccagtccagacaccagcccggt
gtgccacccatcaacacgtccgctgggatacgagcgcaagttccccatcagtacttgtcg
cctcaggtgccaggttccatgctgaagcaggtggcacctcccagtgccggcgtgggtgga
gttgggggtgtgagtggggtggcgggtgtaggagggggtgtgttcccccctcagctgtcc
ccccagcacatcgccatgctgagcggcatctaccccccccatattcagttccagctggcc
tgccagctcctcctccagcagcagcagaacccccagcagctcacctcaccacagcagcta
caacagctcctacagaaccagagaaagttcccccagaacctacgccagcaggccgacccc
caacagctggccaggatcgtggctgttctccagcagcagaggcagcagcagggtgtcgga
gggggcgccaaactatcaccctctgacctgggaggaggaggccccaaactgcctatgact
gactccctgccccatccaggcatgggtggctctgtggacctgcaccagaaaacacagggc
tactctggctatggtggaggagtgaacctgtctggtctggacatggggggctcggtgatg
ggaggcccaggggggatgaaggacatgggggggcagcagtcccgcttcaaatggatgatg
gagggtcactctcctgccccctcccctcctgagagcctcaacaaaaacggtcctatgtcc
acccctatgagaagggggggctctccatactcccagtatgacatgatgggaggggagggg
ctaggcatgcccctccagagggacaactggcaccgtactcctgggaacaagatgggctcc
aagccccagggcacgtccagctggcctcctgagttccagcccggcgtgccctggaagggg
atccagagcatcgaccctgagtctgacccctacatgaccccagggagcatgatgggaatc
cctgggccgtccagcctcaatgacaccgagcaccagttgctaagagacaacacagaagcc
aacccctccctgaacaccttgctgccttcacctggtgcctggccctacagtgcctcagac
agccccctcaacaacgcacacaactcagcaaagtacacagagtacaagaccagttggccc
cctgagcccattggacacaacaagatgtggaagactaatcgcaaccaacagtcccagcag
ctgccacgcccacccccgggactcaccaatcagaagcaggcctcgccgtcccgtggcccg
tggcaggcccgtggctggggcagctcgagcgggagccaggaaaccagatatggccctggc
tctgcttggagtgatggggggacctccagaggaagctgctggctggtgctctgcaatctc
actccacagatcgacggctccaccctccgtaccatctgtatgcagcatggccccctgctg
acctttcaccttggcctgacccagggcagcgctctgattcgctacagcaccccacaggaa
gctgcgaaggcccagagcgcactacacatgtgtgtcctgggcaataccaccatcttggcc
aagtttgtgagtgaggaagaggttgctcgctattttgcacattcccaggcaggaggggcg
agcggaagccagggggggcccacagggacaggtgcagtgggggccaatagcagcggaggg
agtggagagagggaacgagacagaaccagaggaggaggagagagctctgcccctggagga
ggcggcagctcagggcccgtcagctctggctggcagagtttggacagtacaggaggctgc
ctggatactacccctgcccaggggcccggcctgagcatgtttgcccagtggagcagcaac
ggtgctggggtggctgggggtgtggagcccagcagacagggtttgtggggagggatgggg
ggtggtgggtaccccagcagtagtatgtgggggtcccctgccatagaggatccacaccag
atggggagtcctgctgctctgctgcctggagacctgctaggaggaggggctgattccatc
tga

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