Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382213
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Entry
139382213 CDS
T10872
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139382213
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139382213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139382213
NCBI-ProteinID:
XP_070982194
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Position
24:757774..875604
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AA seq
1650 aa
AA seq
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MALLDIFRLQREGDQPEGLCGGRDCSTCQCFPAKGAQGVPGVLGRQGPQGPPGFPGPQGP
LGEKGYRGEEGFPGVSGPKGDVGIAGVLGYPGLDGVPGHPGPGGVPGLPGLDGCNGTRGD
SGFPGIHGLDGPDGGAGFSGIKGVPGDPTVQFVQYPGIPGDVGSAGVTGLPGFQGISGPR
GPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQGTQGPPGPFEFVDPPEDFY
IKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRGLLGYPGFPGPPGVKGILG
SPGLPGLIGTEGPKGFQGDLGPKGLTEFRQVNYTGMPGESGLPGRPGPPGDVGEMGMHGR
QGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPTPGEPGKPGTAGLSGLKGERGP
PGTYCTPGSPGEPGADGDQGPPGSAGFPGSKGIDGDCDCELLQPSKGDPGFMGIPGLPGL
RGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGPKGQKGDVYLCIKGVKGDIGLPGLA
GRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERGYPGNDGPKGLAGPVGPPGPDVIGA
VGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNPGAPGQKGDSGSPGLNGESGPQGYL
GALGPDGVKGEKGDFGLSGPPGPIGSVGCVGDSGEAGAEGLSYDGAAGSPGFRGSPGLKG
PFGDSVPGAPGPIGLKGVLGLSGPKGVPGPPGPIGLTGAAGLPGTPGRKGEQGESGATGR
YGAPGPTPEQCEEGAPGLQGSMGLTGDIGPPGYAGEKGDNGEEGLSGTGPKGAAGKPGSP
GFPGYLGAQGPMGPLGDPGIPGAQGQKGIIGVPGRDGSVGGPGRSGALGSPGRKGERGFD
GQRGLPGDEGLKGEKGRKGAPGDTGDTNFIPIKGLPGAPELPGLDGFTGPRGDKGPAGGR
GLPGYPGLLGGPGIEAGPQGPPGTCGRSGEPGLPGLPGQRGIIGFPGEIGDQGESGCTGS
PGTPGFPGYSGLKGERGDSIGIAGPAGDRGATGNTGAFAAPGDQGDVGEPGVSGAPGPKG
LTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSGQTGPKGDQGPLGLKGPPGPLGLHG
LDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGCQGPQGPSQPGPLGPKGQSGLTGSP
GDTGASGLPGMDCKESMPGHCGESGFPGRDGPPGSPGDIGCSGPALPMTSEEGDNGVPGL
PGLKGDKGTSGPPGLPGIAGLPGPKGERGASGMMGVPGHPGSTGTCGPPGPKGTEGLQGD
EGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTGGPGSNGFEGQKGRSGQLGSPGIPG
PEGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAGSPGPTTTFNSGFLLVMHSQSDMLP
SCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCMRLFSTMPFSFCNMGTCDYASRNDK
SYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPAVAVHSQDNSNPFCPPNWRSLWVGY
SFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTCHYFANIYSFWLTRVGANG
PLNSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggcactgctggacatcttccgattgcaaagggaaggggaccaaccggagggactctgt
ggggggcgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttcca
ggtgttttaggacgacaggggcctcaggggccacctgggttcccgggcccccaggggcct
cttggagagaagggatatcgaggagaggagggcttccctggcgtatctggaccgaaggga
gacgtgggtattgctggcgtactaggatatcctggactagatggtgtcccgggtcaccca
gggccagggggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggac
tctggtttccctggaatccatggtctggatgggcctgatgggggagcgggtttctcaggg
atcaaaggagtgccaggggaccccaccgttcagttcgtccagtaccctggtatacctggt
gatgtcggcagtgctggggttactggactgcctggcttccaaggcattagcggccctagg
ggacctactggaccagttggtttggatggatcagatggtttaactggttcacctggcctg
agaggtccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagac
cagggtacccaagggcccccaggaccctttgagtttgtggaccccccagaagatttctac
atcaaaggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgat
ggattcgactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtc
aggggtcttcttggatatcctggcttccctgggccacctggtgtaaaggggatcctcggg
agccctggcctacctggtctgataggaacggagggacccaaggggttccaaggagatctt
ggtcccaaaggactgacagagttcaggcaggttaattatacagggatgccaggggagtcg
gggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggccgc
caaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaatagggatg
actggcaccaagggggttaaaggagagccagggatgcactaccagaacgggcctacaccc
ggagagcctggtaaaccgggcacagcaggcctcagtggtctgaaaggagagcgcggcccc
ccaggtacgtactgcacccctggttcaccaggagagcctggagcagatggagatcaaggt
cctcctggatctgcagggttccctggtagcaaaggaattgatggtgattgtgattgtgag
ctcctccagccttcaaagggagaccctggctttatggggattccgggattgccagggtta
cgaggactttgtggggcaccaggcccgaggggcgacattggttttcccggagacatagga
agaagtggggcagacggcttcccaggatttgcaggtgtccggggtccaaaaggtcagaaa
ggtgatgtctatctatgcattaaaggtgtgaagggagacattggccttccggggctggct
ggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggtgtgcctggtgac
gctggcccagagggtgacagttactcaggattcccgggtgagagagggtatccaggtaat
gacgggccaaaagggcttgctggacccgtcggccccccaggacctgatgtgattggggca
gtgggggaacggggactcccaggcgaccagggacctccaggattcaggggatctcctggg
ctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccctggtgccccagga
cagaaaggcgattccggaagcccagggctgaacggagagtcaggaccccaagggtatctt
ggagctttgggcccagacggggtgaagggagagaaaggagactttgggctgtctggccca
cctggacccataggctcggtggggtgtgttggagactctggagaggctggtgctgagggt
ctgagctacgacggagctgccggctctcctggcttccgagggtctccaggactgaagggc
ccatttggggactctgtccctggtgctccaggacctataggcctcaagggcgtactgggt
ctgtcggggcccaaaggagtgccaggtccacccggtccaatcggattaacaggtgctgcg
gggcttcctggtacaccgggaaggaagggggagcagggagagagtggtgccacaggcaga
tatggggccccagggcccacccctgaacagtgtgaagagggggccccaggccttcaagga
tccatgggactaacaggggacataggccctccaggttacgcaggcgagaagggtgataac
ggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaaccgggctctcca
gggtttcctgggtaccttggagcccagggccccatggggccattaggagaccctggcata
cccggggctcaaggacagaaaggtataataggggtacctggtagggatgggtcagttggt
ggtccagggaggagtggagcactaggatccccgggaaggaaaggagagaggggctttgac
ggtcaacgaggcttaccaggagatgagggcctcaaaggagaaaagggtagaaaaggtgcc
cccggagacacaggagacaccaacttcattccgatcaaaggactaccaggagctcccgaa
ctcccaggtctggatggcttcactggtccaagaggtgacaagggtcctgcgggaggcagg
ggtctaccagggtacccagggcttttgggggggcctggcatagaggctgggcctcaagga
ccacctggtacatgtggacgctcaggtgaacctggactacctggcctgcctggccagagg
ggtatcataggcttccctggagagattggtgatcagggtgaatctgggtgtactggatct
cctggcacacctggcttcccagggtacagtggtcttaaaggtgaacggggcgactctatt
ggcatcgctggaccggctggtgatagaggagctacagggaacactggagcatttgccgca
ccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctccaggacctaaaggg
ttaactggtcctcaaggatccatcggacctccagggcctgctggtgtgatcggaccccca
ggcctgagtggtaaacctggggctgatggtctcccagggacctctggacaaactgggccc
aagggagaccaaggaccacttggactcaaaggtccacctggaccactgggtttgcatgga
ctggacggactaaagggtgtgaagggagaggttggggccagaggcccaggtgtgcccggt
ccctccggtgctccaggctataaaggagagaagggttccagagggtgtcaagggcctcag
gggccctctcagccaggacctctgggccccaagggccagtctggactaacgggaagccca
ggagacacaggtgcctccggtctaccaggcatggactgtaaggagtccatgcccggccac
tgtggggagtcaggcttccctggacgcgacggaccaccaggttcaccaggtgacattggc
tgctccggccctgctctgcccatgaccagtgaagagggggacaacggtgtgcccggctta
ccagggctcaaaggggacaaggggacttcaggcccccccgggctgcctggcattgcaggg
ttacctgggcctaaaggtgagagaggagcttcggggatgatgggggttccaggacacccc
ggttccacaggaacatgtgggcccccaggacccaaaggaaccgagggactgcaaggagat
gaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatcccacctcctcct
ggacccgtaggtgcacccggtcaaccaggccttcctggcttcactggcggaccgggatcc
aacggttttgagggacagaaagggagaagtggccagttgggttcaccaggaatcccgggg
cccgagggccccccaggagcagatggggccccaggggacagtggggtacagggggagagg
ggggcattgggaccacagggcgccccaggtcctttgggagatgccggcagcccaggcccc
accaccacctttaactctggcttcctgttggtgatgcacagccaatcagacatgctccct
tcctgtccagcagacatgacacaactgtggactggctacagtttgctgtacctggagggc
caagagaaagcccacacacaggacctcggtcaggctgggtcatgtatgcgtctcttcagc
accatgccgttctccttttgcaacatgggcacgtgtgactacgccagtcgcaatgacaag
tcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggcagaccaggacatc
caacaacacatcagccgctgtgtggtgtgtgaggccccctcccctgctgtggcagttcac
agccaggacaacagcaatcccttctgtccccccaactggaggagtctttgggtaggatac
tccttcctcatgcacacaggggccggcgatgagggtggtggccagtctctgacatcatca
ggaagctgcctgagggacttccgtgcccagccgttcgtggaatgccagggcccgcggggt
acgtgccactacttcgccaacatctacagcttctggttgacccgggtgggcgcaaatgga
ccgctgaactcctctacttcacagggcacgctcaaagaggagtggcaacagcgcctcaac
gtgggccggtgcaacgtgtgtatgaaggagtga
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