Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382213
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Entry
139382213 CDS
T10872
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139382213
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139382213
09142 Cell motility
04820 Cytoskeleton in muscle cells
139382213
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139382213
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139382213
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139382213
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139382213
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139382213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139382213
NCBI-ProteinID:
XP_070982194
LinkDB
All DBs
Position
24:757774..875604
Genome browser
AA seq
1650 aa
AA seq
DB search
MALLDIFRLQREGDQPEGLCGGRDCSTCQCFPAKGAQGVPGVLGRQGPQGPPGFPGPQGP
LGEKGYRGEEGFPGVSGPKGDVGIAGVLGYPGLDGVPGHPGPGGVPGLPGLDGCNGTRGD
SGFPGIHGLDGPDGGAGFSGIKGVPGDPTVQFVQYPGIPGDVGSAGVTGLPGFQGISGPR
GPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQGTQGPPGPFEFVDPPEDFY
IKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRGLLGYPGFPGPPGVKGILG
SPGLPGLIGTEGPKGFQGDLGPKGLTEFRQVNYTGMPGESGLPGRPGPPGDVGEMGMHGR
QGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPTPGEPGKPGTAGLSGLKGERGP
PGTYCTPGSPGEPGADGDQGPPGSAGFPGSKGIDGDCDCELLQPSKGDPGFMGIPGLPGL
RGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGPKGQKGDVYLCIKGVKGDIGLPGLA
GRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERGYPGNDGPKGLAGPVGPPGPDVIGA
VGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNPGAPGQKGDSGSPGLNGESGPQGYL
GALGPDGVKGEKGDFGLSGPPGPIGSVGCVGDSGEAGAEGLSYDGAAGSPGFRGSPGLKG
PFGDSVPGAPGPIGLKGVLGLSGPKGVPGPPGPIGLTGAAGLPGTPGRKGEQGESGATGR
YGAPGPTPEQCEEGAPGLQGSMGLTGDIGPPGYAGEKGDNGEEGLSGTGPKGAAGKPGSP
GFPGYLGAQGPMGPLGDPGIPGAQGQKGIIGVPGRDGSVGGPGRSGALGSPGRKGERGFD
GQRGLPGDEGLKGEKGRKGAPGDTGDTNFIPIKGLPGAPELPGLDGFTGPRGDKGPAGGR
GLPGYPGLLGGPGIEAGPQGPPGTCGRSGEPGLPGLPGQRGIIGFPGEIGDQGESGCTGS
PGTPGFPGYSGLKGERGDSIGIAGPAGDRGATGNTGAFAAPGDQGDVGEPGVSGAPGPKG
LTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSGQTGPKGDQGPLGLKGPPGPLGLHG
LDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGCQGPQGPSQPGPLGPKGQSGLTGSP
GDTGASGLPGMDCKESMPGHCGESGFPGRDGPPGSPGDIGCSGPALPMTSEEGDNGVPGL
PGLKGDKGTSGPPGLPGIAGLPGPKGERGASGMMGVPGHPGSTGTCGPPGPKGTEGLQGD
EGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTGGPGSNGFEGQKGRSGQLGSPGIPG
PEGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAGSPGPTTTFNSGFLLVMHSQSDMLP
SCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCMRLFSTMPFSFCNMGTCDYASRNDK
SYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPAVAVHSQDNSNPFCPPNWRSLWVGY
SFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTCHYFANIYSFWLTRVGANG
PLNSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggcactgctggacatcttccgattgcaaagggaaggggaccaaccggagggactctgt
ggggggcgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttcca
ggtgttttaggacgacaggggcctcaggggccacctgggttcccgggcccccaggggcct
cttggagagaagggatatcgaggagaggagggcttccctggcgtatctggaccgaaggga
gacgtgggtattgctggcgtactaggatatcctggactagatggtgtcccgggtcaccca
gggccagggggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggac
tctggtttccctggaatccatggtctggatgggcctgatgggggagcgggtttctcaggg
atcaaaggagtgccaggggaccccaccgttcagttcgtccagtaccctggtatacctggt
gatgtcggcagtgctggggttactggactgcctggcttccaaggcattagcggccctagg
ggacctactggaccagttggtttggatggatcagatggtttaactggttcacctggcctg
agaggtccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagac
cagggtacccaagggcccccaggaccctttgagtttgtggaccccccagaagatttctac
atcaaaggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgat
ggattcgactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtc
aggggtcttcttggatatcctggcttccctgggccacctggtgtaaaggggatcctcggg
agccctggcctacctggtctgataggaacggagggacccaaggggttccaaggagatctt
ggtcccaaaggactgacagagttcaggcaggttaattatacagggatgccaggggagtcg
gggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggccgc
caaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaatagggatg
actggcaccaagggggttaaaggagagccagggatgcactaccagaacgggcctacaccc
ggagagcctggtaaaccgggcacagcaggcctcagtggtctgaaaggagagcgcggcccc
ccaggtacgtactgcacccctggttcaccaggagagcctggagcagatggagatcaaggt
cctcctggatctgcagggttccctggtagcaaaggaattgatggtgattgtgattgtgag
ctcctccagccttcaaagggagaccctggctttatggggattccgggattgccagggtta
cgaggactttgtggggcaccaggcccgaggggcgacattggttttcccggagacatagga
agaagtggggcagacggcttcccaggatttgcaggtgtccggggtccaaaaggtcagaaa
ggtgatgtctatctatgcattaaaggtgtgaagggagacattggccttccggggctggct
ggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggtgtgcctggtgac
gctggcccagagggtgacagttactcaggattcccgggtgagagagggtatccaggtaat
gacgggccaaaagggcttgctggacccgtcggccccccaggacctgatgtgattggggca
gtgggggaacggggactcccaggcgaccagggacctccaggattcaggggatctcctggg
ctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccctggtgccccagga
cagaaaggcgattccggaagcccagggctgaacggagagtcaggaccccaagggtatctt
ggagctttgggcccagacggggtgaagggagagaaaggagactttgggctgtctggccca
cctggacccataggctcggtggggtgtgttggagactctggagaggctggtgctgagggt
ctgagctacgacggagctgccggctctcctggcttccgagggtctccaggactgaagggc
ccatttggggactctgtccctggtgctccaggacctataggcctcaagggcgtactgggt
ctgtcggggcccaaaggagtgccaggtccacccggtccaatcggattaacaggtgctgcg
gggcttcctggtacaccgggaaggaagggggagcagggagagagtggtgccacaggcaga
tatggggccccagggcccacccctgaacagtgtgaagagggggccccaggccttcaagga
tccatgggactaacaggggacataggccctccaggttacgcaggcgagaagggtgataac
ggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaaccgggctctcca
gggtttcctgggtaccttggagcccagggccccatggggccattaggagaccctggcata
cccggggctcaaggacagaaaggtataataggggtacctggtagggatgggtcagttggt
ggtccagggaggagtggagcactaggatccccgggaaggaaaggagagaggggctttgac
ggtcaacgaggcttaccaggagatgagggcctcaaaggagaaaagggtagaaaaggtgcc
cccggagacacaggagacaccaacttcattccgatcaaaggactaccaggagctcccgaa
ctcccaggtctggatggcttcactggtccaagaggtgacaagggtcctgcgggaggcagg
ggtctaccagggtacccagggcttttgggggggcctggcatagaggctgggcctcaagga
ccacctggtacatgtggacgctcaggtgaacctggactacctggcctgcctggccagagg
ggtatcataggcttccctggagagattggtgatcagggtgaatctgggtgtactggatct
cctggcacacctggcttcccagggtacagtggtcttaaaggtgaacggggcgactctatt
ggcatcgctggaccggctggtgatagaggagctacagggaacactggagcatttgccgca
ccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctccaggacctaaaggg
ttaactggtcctcaaggatccatcggacctccagggcctgctggtgtgatcggaccccca
ggcctgagtggtaaacctggggctgatggtctcccagggacctctggacaaactgggccc
aagggagaccaaggaccacttggactcaaaggtccacctggaccactgggtttgcatgga
ctggacggactaaagggtgtgaagggagaggttggggccagaggcccaggtgtgcccggt
ccctccggtgctccaggctataaaggagagaagggttccagagggtgtcaagggcctcag
gggccctctcagccaggacctctgggccccaagggccagtctggactaacgggaagccca
ggagacacaggtgcctccggtctaccaggcatggactgtaaggagtccatgcccggccac
tgtggggagtcaggcttccctggacgcgacggaccaccaggttcaccaggtgacattggc
tgctccggccctgctctgcccatgaccagtgaagagggggacaacggtgtgcccggctta
ccagggctcaaaggggacaaggggacttcaggcccccccgggctgcctggcattgcaggg
ttacctgggcctaaaggtgagagaggagcttcggggatgatgggggttccaggacacccc
ggttccacaggaacatgtgggcccccaggacccaaaggaaccgagggactgcaaggagat
gaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatcccacctcctcct
ggacccgtaggtgcacccggtcaaccaggccttcctggcttcactggcggaccgggatcc
aacggttttgagggacagaaagggagaagtggccagttgggttcaccaggaatcccgggg
cccgagggccccccaggagcagatggggccccaggggacagtggggtacagggggagagg
ggggcattgggaccacagggcgccccaggtcctttgggagatgccggcagcccaggcccc
accaccacctttaactctggcttcctgttggtgatgcacagccaatcagacatgctccct
tcctgtccagcagacatgacacaactgtggactggctacagtttgctgtacctggagggc
caagagaaagcccacacacaggacctcggtcaggctgggtcatgtatgcgtctcttcagc
accatgccgttctccttttgcaacatgggcacgtgtgactacgccagtcgcaatgacaag
tcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggcagaccaggacatc
caacaacacatcagccgctgtgtggtgtgtgaggccccctcccctgctgtggcagttcac
agccaggacaacagcaatcccttctgtccccccaactggaggagtctttgggtaggatac
tccttcctcatgcacacaggggccggcgatgagggtggtggccagtctctgacatcatca
ggaagctgcctgagggacttccgtgcccagccgttcgtggaatgccagggcccgcggggt
acgtgccactacttcgccaacatctacagcttctggttgacccgggtgggcgcaaatgga
ccgctgaactcctctacttcacagggcacgctcaaagaggagtggcaacagcgcctcaac
gtgggccggtgcaacgtgtgtatgaaggagtga
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