Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382331
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Entry
139382331 CDS
T10872
Name
(RefSeq) interferon regulatory factor 3-like
KO
K09447
interferon regulatory factor 7
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04620
Toll-like receptor signaling pathway
ocla04621
NOD-like receptor signaling pathway
ocla04622
RIG-I-like receptor signaling pathway
ocla04623
Cytosolic DNA-sensing pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139382331
04621 NOD-like receptor signaling pathway
139382331
04622 RIG-I-like receptor signaling pathway
139382331
04623 Cytosolic DNA-sensing pathway
139382331
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139382331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139382331
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
139382331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
OYE-like_second_a-b
Motif
Other DBs
NCBI-GeneID:
139382331
NCBI-ProteinID:
XP_070982388
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All DBs
Position
2:complement(71429494..71434954)
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AA seq
455 aa
AA seq
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MTEVRGSALKMQSRNPKPQFADWLIEQVWTGQYAGLCFVDNNKFRVPWKHISRKDCCEDD
SKIFRAWAVVSGKINTHPNDKAKWKTNFRCVLNNLTKRFMMVEDHSKDSDDPHKVYLIIN
NESNYGSPHIEEIAVEDYDIDIHSSLTSTGYTPPGMEHDNLLKLVNTIDLNQHTEEWAET
YIHTHHPVVPEDCYPFQPLTEPQPVSQNHSPPPVPVPVQQPYDHVNQDALLNLPAAQPSL
CDLEITISYRRREMLKTQVSGPMVQLHYQCDVPEPNAQTLCFPSTDGLLDHKQIEYTNCI
LESVQRGLLLEVRNTGIYGYRQDKCHVFSSTSDPREAHPEPRKMPQNEMVQLLSFDKYMT
ELIAFKENRGGSPDYTIHMCFGEKFPDGKPLEKKLIIVKVVPLICRHFHEMAQGEGASSL
QNDNISLQISHHNSLMELISATWPDGPEHTMGQYF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtacgtggctcagcattaaagatgcaaagccgcaaccccaaacctcagttt
gcggactggctgatagaacaggtgtggaccgggcaatacgccgggttgtgttttgtggac
aacaacaagttcagagtcccgtggaaacacatctctaggaaggactgctgcgaggacgac
agtaaaatattcagggcatgggcagtggtcagtggtaaaatcaacacgcatcccaatgac
aaggcaaagtggaagactaacttccgctgtgtactgaacaacctgaccaagcgtttcatg
atggtggaagaccactccaaggactcagacgacccccataaagtctacctgattatcaac
aatgagtctaactatggaagcccacacatagaggaaattgctgtggaggactatgacatt
gacatccacagctctctcacctctacaggctacacccccccaggcatggagcatgataat
ctactcaagcttgtgaacaccatagacctgaaccaacatactgaggagtgggcagagacc
tatatacacacacaccacccagtggtaccagaagactgctaccccttccagcctctaaca
gagccccagccagtctcccagaaccactcaccgccaccagtcccagtcccagtacagcag
ccatacgaccacgtgaaccaggatgccctgctcaacctgcctgctgcccagccgtctctc
tgtgacctggagatcaccatctcctacaggaggagagagatgctgaagacccaggtgtca
ggccccatggttcagctccactaccagtgtgatgtccctgagcccaacgcccagaccctc
tgcttccctagcactgacggcctgctagaccacaaacagattgaatacaccaactgcatc
ctagagagtgtccaaaggggtcttctcctggaggtacgaaacacgggtatctatggttac
cggcaggacaaatgccatgtgttctctagtactagtgaccccagagaggcacaccctgaa
cccaggaagatgccccaaaatgaaatggtacaactgttgagcttcgacaagtacatgact
gagctgatagcatttaaggagaacagaggaggctctcctgactataccatccacatgtgc
tttggcgagaagttcccagacggaaaacccctggagaagaaactcatcattgtcaaggtg
gttcccttgatctgtcgtcacttccacgagatggcccagggggagggggcatcttccctc
cagaacgacaacatcagcctgcagatctcccaccacaacagcctgatggagcttatcagt
gccacctggcccgacggcccagagcacaccatggggcaatacttctag
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