Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382346
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Entry
139382346 CDS
T10872
Name
(RefSeq) contactin-5-like
KO
K06761
contactin 3/4/5/6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139382346
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
139382346
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Contactins
139382346
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
Others
139382346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_C17orf99
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Sp38
fn3_4
Interfer-bind
YejG
IMPa_N_2
Motif
Other DBs
NCBI-GeneID:
139382346
NCBI-ProteinID:
XP_070982418
LinkDB
All DBs
Position
24:complement(46973354..47286871)
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AA seq
1064 aa
AA seq
DB search
MKPDSSSSLLSSRPQLRHRHDHGVGILTPDSPASFSNHHLSAPSLLSSQEEYSSQAREEF
GPVFVQEPDDAIFPLHSEEKKVMMSCEARGNPAPAYSWFINGTEVDIEAVYRYSLIDGNL
IITNASETADYGRYQCKAENSYGTVLSRDALLQFTYLGSFSGRTRGGVSVREGQGVVLMC
TPPPHSPEIIYTWVFNEFPSFVAEDSRRFISQVTGNLYVSKVQPSDVGSYICLVKNTVTN
ARVLSPPTPLTLRTDGTMGEYEPKIEVHFPQSVLAARGVTVSLECFALGNPVPTITWRKM
NGNIPKKARLRKSQAVLEIPNAQLEDTGTYECKAENPRGGTAFKGHIQIYTFPQWISTIN
DSQLDSGDQLHWECKATGIPRPTYRWLRNGELITPQSRVEMVNGELIIQKVQQADSGMYQ
CVAENKYGAIYCSAELKILASPPVFSLNPVRLIATLGKDVLLECKPRASPKPRVTWRRGD
RRIHPSRRIMLLRNNTLRIINSSRSDEGDYVCRAENQFGSAEMTAMLRVKEAMRVELSPC
KVEVTVGESVVLSCKVSHDPSLEVAFQWLLNQQPLNFQQEGGHFEYIQRQSSTVDLMIRS
ILLQHAGKYSCRAQTSADTLFAEAEVLVRGPPGPPGVVIVEEITDTTATLSWSGGVDNHS
PISSYNLQARSPFSLGWQTLRTDPEPVTGDMESAMAVDLNPWVDYEFRVVASNAIGTGDP
SAPSRRVRTKEAVPSVAPANVSGGNGRRHELVTSWEPVSEEFQNGKGFGYIVAFRANGTR
GWKEKMVTSADSTTYKYRDETFPPLTPFEVKVGVYNNKGDGPFSGVVTVYSAEGEPRDAP
SEVKASSISSKEIKVTWRQINPGPGRPRGYEVSYRKDSEQEESGKKKKTAGNETSMVLTG
LEGNSVYVITVRGFNSIGQGPASTANTAKTKKDPPVQPPANLMWIQEGTNVSLNWEPVKS
KDNESDVIGYKVLLSQEGRVHHQVMRTITPSAVLSLPEGGTYIIEVRAVSEGGEGATSSQ
VRVLTSSGVRAKSGQCSVHSLLPWGLPWTTAMLLSVPLVPSASW
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggacagctcgtcgtcactgctaagttcacggccacagcttcgacacagacat
gaccacggtgtagggattttgactcctgactcgccggcatccttctccaaccatcacctg
tctgcccccagtctgctcagctcccaggaggaatacagtagccaagcgagggaagagttt
gggccagtgtttgtccaggaaccagatgacgccatctttccgttgcactctgaggagaag
aaagtgatgatgagctgtgaagccagaggcaaccctgcacctgcatacagttggtttatc
aatggaacagaagtggatattgaggcagtttaccgttacagcttgatcgacggcaacttg
ataataaccaatgccagcgagacggcagactatgggagataccagtgtaaggcagagaac
agctacgggacggtcctgagtcgggatgcactgctacagtttacctatctggggtccttc
agtgggaggacgagaggaggcgtgtctgtaagggaaggacaaggagtggtgctcatgtgt
actccaccccctcattcaccagagattatctacacctgggttttcaacgagttcccgtca
tttgttgccgaggacagccggcggtttatctcacaggtaacgggcaacctgtatgtctcc
aaggtgcagcctagcgacgtgggcagctacatctgtctggtgaagaacacggtgaccaac
gccagggtcctcagcccgcccactccactcacactcagaacagatggtacaatgggagaa
tatgagcctaaaatcgaggtgcatttcccccagtctgtcctggctgccagaggagtcacc
gtgagtctggagtgtttcgccctggggaatcccgtcccaaccataacgtggaggaagatg
aatggtaacatccctaagaaggctcgtctgaggaagtcccaggctgttctggagatccct
aatgcacagcttgaggacactgggacctacgagtgtaaagcggagaaccccagaggagga
acagcctttaagggacacatccagatctacaccttcccccagtggatcagcacgataaac
gacagccagttggacagtggagatcagctgcactgggagtgcaaggccacagggatccct
agacccacctaccgctggctccgcaatggagagttgatcacaccacagagcagggtggag
atggtgaatggagagctcattatccagaaggtccaacaggctgactctgggatgtaccag
tgtgtcgctgagaacaaatacggagccatctactgcagcgcagaactcaagatcttagca
tcgcccccagtcttcagccttaaccctgtccgtctgatcgccacgttggggaaggacgtg
ttgttggagtgtaaaccccgagcatcacccaagcctagagtaacatggaggagaggagac
agacgcattcatcccagcagaaggataatgttattacgaaataacactctgaggatcatc
aactccagtcgctctgacgagggggactatgtatgtcgagctgagaatcagtttggttcg
gctgagatgacggccatgctccgggtaaaagaggccatgcgtgtggaattgagcccgtgc
aaagtggaggtgacggtgggggagagcgtggtgctcagctgtaaggtgtcacatgacccg
tctctggaagtggccttccagtggctcctcaaccagcagcccctcaacttccaacaggag
ggcggacattttgaatacatccaaagacagtcctccacggtggacctgatgatcagaagc
atcttactgcagcatgctgggaaatacagctgccgggctcagaccagcgccgacactttg
tttgctgaggctgaagtccttgtcagaggccccccaggaccccctggtgtggtgatagta
gaggagatcacggacactacagccaccctgtcgtggagtggaggggtggacaaccacagc
cccatcagcagctacaatctccaggcccggagccctttttccctgggctggcagaccctc
aggacagacccagagccagtgacaggggacatggagtcagccatggctgtggacctgaac
ccctgggtggactatgaattcagggtggtggccagcaacgctatcgggacaggagacccc
agtgccccatccagaagggtccgtactaaagaagcagtcccctcggtggccccagctaac
gtcagtggagggaacggccgcaggcatgaactggttacctcctgggagcctgtgtctgag
gagttccagaatggcaagggctttggctacatcgtggcattccgagccaatggtacgcga
ggctggaaggagaagatggtgacatcagcagattccactacatacaagtacagagacgag
accttccctcccctcacccccttcgaagtgaaagtgggcgtgtacaacaacaagggagac
ggacccttcagtggtgtggtcactgtgtactctgcagagggagagcccagggacgcccca
tctgaggtgaaagcttccagcatttcctctaaggaaattaaggtcacttggagacagatc
aaccctggtcctgggagaccacggggatacgaggtgagctacaggaaggacagtgagcag
gaggagtcagggaagaagaagaagacagcaggtaacgagacatctatggtgctgacaggg
ttggaggggaacagtgtgtacgtcatcacagtcagaggcttcaacagtatcggccagggc
cctgcatcaaccgctaacaccgccaagaccaagaaagatcctccagtccagcctccagcc
aacctcatgtggattcaggaaggaactaacgtgtctctaaactgggagccggtcaagtct
aaagacaacgagtcagatgtcataggatacaaggtgttattgagccaggaggggcgtgtc
caccatcaggtaatgaggaccatcaccccctcggctgtcctctctctccctgaggggggc
acatacatcattgaggtgcgggcggtgagtgaggggggagagggagcaaccagctcccag
gtcagagtactcacctcttcaggtgtccgagcgaagagtggccagtgttcggttcacagc
ctgctaccgtggggcctgccatggactactgctatgctcctctccgttcctctggtgcct
tcagcttcctggtga
DBGET
integrated database retrieval system
