Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382449
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Entry
139382449 CDS
T10872
Name
(RefSeq) scavenger receptor class F member 1-like isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139382449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139382449
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Scavenger receptors
139382449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
139382449
NCBI-ProteinID:
XP_070982607
LinkDB
All DBs
Position
24:17147848..17155523
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AA seq
989 aa
AA seq
DB search
MGLFLTGLGLLLCCSLSSPQRLAPSGRNVCQDLRDPSNLVCCTGWRQQGEECTIPVCDDE
QACQQDEVCVYPGVCRCRPGYYGAHCKTRCPPEFWAPDCREMCKCHPHGRCDPITGECTC
LPNRWGPLCQNACRCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRCQ
CASGYWGQKCSLRCSCYMSSCQQKTGACECQNRWWGPSCDRHCNCDLEHSECNAVSGECV
CQPGYKGAVCNAPCGPGEYGSGCTLSCGHCKRGQSCSVVDGVCTACEPGWNGTRCDRPCK
RGYHGNDCHEACPRCRNGEPCNPRTGACSRCDPGWTGPRCDKPCFNRTFGDACRFLCSPC
FHGHCDHVTGSCVCGPGFQGQSCNITCPDQLYGFNCSSVCDCGEGTACHPETGACPYSGH
RALIAGILVPLILVLLGLVCCCCCCGGPTDGKDRCVCVCMILMAKACVCVCVPLTLLWSY
RVAVGDGGTSVRMKHHVYNVLANVSSAVPCISVWSSGLPRVTVSHHDPELTFNHSFIEPP
SSGWVTDGSSFDSDEETGEALYCVPPREDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSV
SAEDMSLPFGIPRTSSNAKSKRPSVSFAEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGV
LMLSALQAHGGKASEGEETETGEGSVDGCGGGTGPLEEPGSSGEAGDPDVDRYTATPSQA
MSTLQVPGAVVGRRRTISNAAVNRKGGQTPGSTSDGQKAEIDKGMDKVTTVYVTVGKAGV
GRPLSKLELPSSEGPVQAMLRRLGSLQRHKDQEGGTRSKGKIPGAEGITKPPRRKLGARA
SVWEQGGHPPLGVEGPVGEGVPMRKPSRRKQHAHHSSPAVMGNTDDGTNTHPPPEGANAT
ITPTRPLSSILKSVPEVAGLEVMGKRSAVRGENGDPGMHTETDSGYLTVGPAGVVTNAVS
LSEVIANDGVVASVDDGANLYENVMIMHS
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgtttctgacgggtctaggattactgctctgctgttccctctcctcccctcag
agactggctccctcagggagaaatgtctgccaggacctcagggatccctccaatcttgta
tgttgtactggatggaggcaacagggagaggagtgtactatacctgtgtgtgatgatgag
caggcctgccagcaggatgaggtgtgtgtatacccgggtgtctgtcgctgtcggcctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagatgtgcaagtgccaccctcacgggcgatgtgacccgatcacgggcgagtgcacatgc
ctccccaaccgctgggggccactctgccagaacgcctgcagatgtggccgccacgggcac
tgtcaccctgtgcacggcaactgcacctgcgacgagggctggtggacgcccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgcctcagggtactggggtcagaagtgcagccttcgctgtagctgctacatgtcgtca
tgccaacagaagacgggggcgtgcgagtgccagaacaggtggtggggtccgtcgtgtgat
cgccactgtaactgtgacctggagcacagcgagtgtaatgccgtcagcggggagtgtgta
tgtcagcctgggtacaagggagccgtctgtaatgcgccgtgtggacctggggagtatggc
agtgggtgtacactgagctgtggccactgtaaacgaggccagtcgtgctctgtggttgac
ggtgtctgtacggcctgtgagcctgggtggaacggcacacgctgtgaccggccgtgcaag
cggggttaccatggaaatgactgccatgaggcctgcccacgctgcaggaacggtgaacca
tgcaaccccaggacgggggcgtgttcacgatgtgatccaggatggaccggacccagatgt
gacaagccatgctttaacagaacattcggggacgcctgccgcttcctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcccgggttccaggga
cagagttgtaacatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gactgtggagagggcaccgcctgtcacccagaaacgggggcgtgtccatacagtggtcac
agggctctgatcgctggtatcctggtgcctctgatcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacaggtgtgtgtgtgtgtgtatg
attctgatggcaaaggcatgtgtgtgtgtgtgtgttcctctgaccttgctctggtcctac
agggtagcagtgggtgacggtggtacctctgtccgtatgaagcatcatgtgtataacgtc
ctggccaacgtgagctctgctgtaccctgtatctctgtctggtcctctgggctacccaga
gtcacagtgtcccaccacgaccctgagctgacattcaaccacagtttcatagagcctccc
tcctcaggctgggtgacggacggatcctccttcgacagtgatgaggagaccggagaggct
ctctactgtgtcccccccagagaagacatccctgcagtggcgggcggtgagttccaggag
ttccagcatgagatgagttctaagtgtaacatgttccccgacccctctgccttcagcgtt
agtgcagaagacatgtccctcccctttggcatcccccgcacctccagcaacgccaagtcc
aaacgcccctccgtctccttcgccgaaggcaccaggttcagccccaaggagcgccgaggc
tctgcccaggacctgactcccggggccccccgcaccaaacctaagtccccctggggggtc
ctgatgctgtcagccctccaggcccatggagggaaggcctcagagggggaagagactgag
acaggtgaggggagtgtggatggatgtggaggtgggactggaccattggaagaaccagga
tccagtggtgaagcaggggaccctgatgtggacaggtacacggccaccccgtcccaagcc
atgtctaccctgcaggtgcctggagcagtggtaggaagaagacgcaccatatccaacgct
gctgttaacagaaagggtgggcaaacaccagggtccacatccgatggccagaaggcagag
atcgataaagggatggacaaggtgaccacagtgtacgtgacagtgggtaaggcgggggtg
gggaggcccctgtctaaactagagctccccagctcggagggcccggtacaggccatgcta
cgcaggctaggcagcctccagagacataaagaccaggaggggggaactaggtccaagggt
aagatcccgggagcggagggaatcaccaagccacctaggaggaagctaggggccagggcc
agtgtgtgggagcaggggggtcacccacccttgggggtggagggtcctgtaggggaaggc
gtacctatgaggaaacccagtaggaggaaacagcacgcccaccacagctcgcctgctgtc
atgggaaacactgacgatggcactaacactcaccccccaccagagggcgccaatgccacc
attacgcctacgaggcccctgtcctctattttgaaaagtgtgccagaggtcgctgggtta
gaagtcatgggtaaaaggtcagcggtgaggggagagaatggtgaccctgggatgcatact
gagactgacagtggatatctaacagtcgggccagctggagttgtaaccaacgctgttagt
ctgagtgaagtcatcgccaatgacggagtagtggccagtgtggacgatggagctaaccta
tatgagaatgtgatgattatgcattcctaa
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