Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382456
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Entry
139382456 CDS
T10872
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139382456
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139382456
mRNA degradation factors
5'-3' decay
Decapping complex
139382456
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139382456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139382456
NCBI-ProteinID:
XP_070982617
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All DBs
Position
24:45055438..45076605
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AA seq
315 aa
AA seq
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MGIVPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRIL
DLIKKGVAKVNQVQMMVLDEADKLLSQDFVVMMEEILSYLPKQRQILLYSATFPLSVQKF
MNSHLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRV
ELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVI
NFDFPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIRPIPGSIDKS
LYVAEYHSENGEVKL
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcgttcccaccagagaactggcattgcaggtgagccaaatctgtatccagatc
agcaaacacatgggaggggtcaaagtcatggccacaacgggtggcaccaacctccgcgat
gacatcatgaggctcgacgagacagtacacgttgtgattgccacccctgggaggatcctg
gacctcattaagaagggtgtggccaaagtcaatcaggttcagatgatggttttggatgag
gcagacaagctgttgtcccaggactttgtcgtgatgatggaggagatattgagctacctg
cccaaacagagacagattctgctctactctgctacctttcctctcagcgtgcagaagttc
atgaactcccacctgtccaagccctacgagatcaacctgatggaggagctgaccctgaag
ggggtcacccagtattatgcctacgttacagagagacagaaggtccactgtctcaacacg
ctcttctccaggctccagatcaaccagtctataatcttctgtaactcgtctcagagggtg
gagctgctggccaagaagatatctcagctgggctactcgtgtttctacattcatgccaag
atgagacaggagcaccgtaacagagtgttccacgacttcagaaacgggctctgccggaat
ctggtctgcacagacctcttcacaagaggtatcgacattcaggcggtgaatgtggtgatc
aactttgacttccccaagctgggcgagacgtacctgcatcgcatcggcagatctggtcgt
tttggtcacctgggtctggccatcaacctgatcacatacgatgaccgcttcaatctgaag
ggcattgaggagcagctgggaacagagatcagacccatccccggcagcatagacaagagc
ctgtacgtagcagagtaccacagtgagaacggagaggtcaagctgtga
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