Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382474
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Entry
139382474 CDS
T10872
Name
(RefSeq) roundabout homolog 1-like
KO
K06753
roundabout, axon guidance receptor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139382474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139382474
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
ROBO family
139382474
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_5
Ig_Rha78A_N
Toxin_19
VID27_N
Motif
Other DBs
NCBI-GeneID:
139382474
NCBI-ProteinID:
XP_070982651
LinkDB
All DBs
Position
24:32151090..32262357
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AA seq
1531 aa
AA seq
DB search
MVAAGEPAVLECMPPRGHPEPSISWKKDSANIDDRDERITIRGGKLMITNARKGDAGKYV
CVGTNMVGERESEIAELTVLERPSFVKRPGSQVVLVDQSVEFRCEARGDPVPTVRWRKED
GDLPKGRYEIREDHTLKIRRLTSADVGSYTCMAENMVGRAEASATLTVHVPPVFVVRPRN
QVVAVGRTVTFQCEATGNPQPAIFWQREGSQNLLFSYQPPQPSSRVSVSQTGDLTITDAE
RSDVGYYSCQALNIAGSVITKALLEVTDVVSDRPPPVVRQGPTNQTVSVDGTVVLSCLAT
GNPTPTLLWRKDGVLVSTHDSRVKQLDTGALQIRYAKMGDTGIYTCTASTPSGEASWKAY
LEVQEFGVPVLPARPTDPNLIPSAPSKPEVTDVTRTSVTLSWKPNLTGATPTSYIIEAFS
HASGSSWQTLAEHVKTESYVLKGLKASAVYLFLVRAANAYGLSDPSPITDTVKTQDISPT
SQGVDHRQIQRELGEVVIHLHNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRTSPEGHQR
SDWTVFEVRTPGEDSTVVPQLRKGVTYEFKVRPFFNEFQGTDSEVKIAKTLEEAPSAAPR
GVTVSESGDNGTAIVVSWQPPPEEEQNGVVQEYKIWCLGNESRYHINRTVDGSTFSLLIP
ILAPGIRYSVEVAASTGAGQGVKSDVTFFQIDSSGRMTEGVLEPENTLSQQISEVVKQPA
FIAGIGAACWIILMVFSIWLYRQRKKRSGLSTNYAGIRKVPSFTFTPTVAYQRGGEAVSS
AGRPGLLNIGESATQPWLADTWPNSCSNHNDCSMNCCTAGQGNSDSNLATYSRPADCIAN
YNNQMESKQTNLMVPEGGVYGDVDLSNKINEMKTFNSPNLKDGRFVGPGGPGGQPTPYAT
TQLIQSSILGNNINTDRDRGRGGGGGGEMNEKHGWKPTPVQLQKQQEMTSQLHQYNIMEQ
NKLNKDHYRGGDSPMATTILYNQAHEAHTGGSYNSSDRGSSSTSGSQGQKKGVRTPKLPK
QSAMNWADLLPPPPVNPPPCRNMEEYSLSMDESYDPDMQCSLPPSRMYLQPDELEEEEGE
EEEMERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQDELQPMLQDTADSIGSGHERRRH
AVSPPPRPLSPSHTYGYISSPMSLDTDGMEEEGEMLEEEEEEEEEEEGDETDAEVAKVHH
HHTHPHHPHHPHHPQQMHPRRLLLRGLEQTPASSMGDLESSVTGSMINGWGSASEEDNAS
SGRSSAVSSSDGSFFTDADFAQAVASAAEYAGLKVAKYTNPTQGQEGGPGGRKYQMTPSG
HRPGSPLSTDSNMSTANMQKRPPKKQKQHPAAGHPGLQRREAYPEDLPPPPIPPPAGLKS
PTHPSKTALETRGVMSPKAGEGRDRRGGSGGGYRPREGSDPRTSSSERRETQDRQKNPRT
GKGNKQEGGSTKARQHPGPEDILPYSRPSFPTVHSPRDIDPRSPSSMSSRGSGGRRRGEG
GAGARRNPNDMGLNTLGAFQPGDDDLEMVES
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagcgggcgagcctgcagtcctagagtgtatgccccctcgcgggcatcctgaa
cctagcatatcctggaagaaggacagtgccaacatcgatgacagagatgaacgaatcact
atccggggaggaaagctgatgataaccaatgccagaaaaggcgacgctgggaagtatgtg
tgtgtcgggaccaatatggtgggagagagggagagtgagatcgctgagctcactgtgctc
gagcgacccagctttgtgaagcgtcccggcagccaggtggtgctggtggaccagagcgtg
gagttcaggtgtgaggcccggggcgacccagttcccaccgtccgctggaggaaagaggac
ggagacctgcccaagggaagatatgagatccgtgaggaccacaccctgaagatccgtcgt
ctgacctctgcagacgtgggttcttacacctgcatggcagagaacatggtgggcagggcg
gaggcgtcggccaccctcaccgtccacgtgccccctgtgtttgtggtgcggcccaggaac
caggtggtggcggtggggaggaccgtcaccttccagtgtgaggcaacaggaaaccctcaa
cctgctatcttctggcagagagagggcagccagaacctgctcttctcctaccagcccccc
cagccctctagccgcgtctctgtctcccagacgggggacctgactatcacagatgcagag
cgctcagacgtgggctactacagctgccaggccctcaacatcgctggctctgtcatcacc
aaggccctgctggaggtgactgacgttgtgtcggatcgcccacctccagttgtccgccag
ggtccaaccaatcagacagtgtctgtggacgggacggtggtcctgagttgcctagcaacg
ggtaaccccacccccaccctcctgtggaggaaggacggtgtgttggtgtccactcatgac
tcccgggtcaaacagctggacacgggcgcactgcagatccgctacgccaagatgggtgac
acaggcatctacacatgcaccgcctccactcccagtggcgaggcctcgtggaaagcctac
ctggaggttcaagagtttggtgttccagtgctgccggccagacccactgaccccaacctg
atccccagtgccccctccaaacctgaggtcactgacgtcacccgcacctctgtcaccctg
tcttggaagcccaacctcacaggagccacgcccacctcctacatcatagaggccttcagt
catgcgtcaggcagcagctggcagaccctggcagaacatgtgaagactgagtcgtatgta
ctgaagggcctgaaggccagtgctgtctatctcttcctggtccgagctgctaacgcctac
ggcctgagtgaccccagccccatcactgacaccgtcaaaacacaagatatctcccccacc
agtcagggagtggaccaccgtcagatccagagggagttaggagaggtggtcatccacctt
cacaaccccaccatcctctcctcctcctctgtcagagtgcagtggacggtggagcagcag
tctcagtacatccagggttataaggtgatgtaccgaacctctccagaggggcatcagagg
agtgactggactgtgtttgaggtgagaaccccaggggaggacagtactgtggtaccccag
ctcaggaagggagtcacctacgagttcaaagttcgccccttcttcaacgagttccaggga
acagacagtgaggtcaagatagccaagactctggaggaagctcccagtgcagcccctcgt
ggggttaccgtctcagagagcggggacaatgggaccgccattgtggtctcctggcaaccg
cctccagaggaggagcagaatggggtggtccaggagtacaagatctggtgtttggggaat
gagagcagataccatatcaaccgtacggtggacggctctaccttctccttgctgatcccc
atcctggctccagggatccgttatagtgtggaggtcgcagccagcactggggcaggccaa
ggggtcaagtctgacgtcaccttcttccagatagactcatcggggcgtatgacggagggt
gtgttggagccagagaacaccctgtcccagcagatcagtgaggtggtgaagcagccggcc
ttcatagcagggataggagcggcctgttggatcatcctcatggtgttcagtatctggctc
taccgacagcgtaagaagaggagtggcctcagcactaactacgcaggcatccgcaaggtg
ccatcctttaccttcactcctacagtggcataccagagagggggagaggctgtcagcagt
gctggaaggccaggtttgctgaacattggggagtctgctacccagccctggttggctgat
acgtggcccaactcctgctccaatcacaatgactgtagcatgaactgctgcaccgcagga
cagggcaacagtgacagcaacctggctacatacagccgcccagccgactgcatcgccaac
tataacaaccagatggagagcaaacagaccaacctgatggtgccggagggaggagtgtac
ggagacgtggacctctccaacaagatcaatgagatgaagaccttcaacagccccaacctg
aaggacggacgcttcgttgggccgggtggaccagggggacagcccaccccgtacgccacc
acacagctcatccagtcgtctatcctgggcaacaacatcaacacagacagagacagaggg
agaggaggaggagggggaggggagatgaacgagaaacacggctggaaacccaccccggtt
cagctgcagaagcaacaggaaatgacctcacagctccaccagtataacatcatggagcag
aacaagctaaacaaggaccactatagaggaggggacagtcccatggctaccaccatcctc
tataaccaggcccacgaggcccacacagggggatcctacaacagctctgaccgtggcagc
agcagcacctctgggagtcaaggtcaaaagaagggagtgcgcacccccaaactacccaaa
cagagtgcaatgaactgggctgaccttctgcctcctcccccagttaacccacctccctgc
cgcaacatggaggagtactccctgtctatggacgagagctatgacccagacatgcagtgc
tccctgcccccctcccgcatgtacctgcagccagatgaactggaagaggaggaaggggag
gaggaggagatggagaggggtcccactccacctgtcagaggggctgcctcgtcccccgcc
gcggtgtcctacagccaccagtccacagccaccctcaccccctcgccccaggatgagctg
caacccatgctccaagacactgcagacagcattggctctggacacgagcgcagacgccat
gcagtgagcccccctccccggcccctctccccctcacacacctacggctacatctccagc
cccatgtccctggacacagacggcatggaggaagagggggagatgttggaggaagaggag
gaggaggaggaggaggaggaaggggacgagacagacgcggaggtggctaaggtgcaccac
caccacacccaccctcaccacccccaccacccccaccacccccagcagatgcaccccagg
aggctgctgttgcggggcctggagcagacgccagcctccagtatgggggacctggagagc
tctgtgacgggatccatgatcaacggctggggttcggcatccgaggaggataacgcctcg
tcagggcgctccagcgctgtcagctcctcagacggatccttcttcacagatgccgacttt
gcccaggcagtcgcgtctgctgcagagtacgcaggcctgaaggtggccaagtacaccaac
cccacgcaaggccaggagggaggccccggaggacgaaagtatcaaatgaccccttcaggc
caccgtcctggcagccccctgtccacagacagcaacatgagcacggccaacatgcagaag
aggcctcctaagaagcagaaacagcaccctgcagcgggccacccagggctccagcgacga
gaggcctaccctgaagatctgcccccccctcccatcccccctccagcggggctcaagtcc
cccacacacccctccaagacagccctggagacccggggggtgatgtcccccaaggcaggc
gagggcagggacaggagagggggctcaggaggagggtaccggccacgggagggatcagac
ccccgtaccagctcctcagagcgccgggagacccaggacagacagaaaaaccctcgcaca
gggaaagggaacaaacaggaggggggcagcaccaaggcacgccaacacccagggccagag
gacatcctgccctacagccgcccctccttccccacggtccacagtccccgagacattgac
cccagatcccccagctctatgtcctcccggggctcaggggggcggcggagaggagagggg
ggggcaggggcccgcaggaaccctaacgacatgggcctcaacaccttgggagccttccag
ccaggagacgatgacttagagatggtggagagctga
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