Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382795
Help
Entry
139382795 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
139382795
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
HECT type E3
139382795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139382795
NCBI-ProteinID:
XP_070983086
LinkDB
All DBs
Position
24:12365607..12419425
Genome browser
AA seq
2065 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVTGRLQSEQVKHKTNSPPESRRPKSKASKAA
PSSASGQSRGHSSRSSSLSLSVASFVLQDDPDAAGTSEREPTGHQSKSEGTTRGLKRSSA
PDLNNTYTPTPAKKSKSHPPPRDHTTESKKGPAKSSKKRPLAPELPTPTGRGQSSKSGAS
GASPTQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSA
STSSSSSTGPNSATSTQGARLKQGKDQNKARRSRSASSPSPRRSTRDREQAKAAVSSKFE
WASRFSPKVNLPKPKLSLPGSSKPETSSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSLCSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEAP
QGASGTASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHR
TIGSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITL
LQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEM
LSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLT
QRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMF
IMVVRMFSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELT
SLICELMPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQ
NGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARA
QLMKEDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNH
AVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLT
SPPKACTSGTASLCTTTISTATTTAASNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKR
KRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNS
EPSRTAGVSGMARATPKDSVSNNRDKIKAWIKEQACKFVARYFNTEKIDGSNPALNVLQR
LCTATEQLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSR
DVRLKRFLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSG
NGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFS
LQSEEERESTDDEANPLGRAGIWTKTHTIWYKPVRDDEDGTKDAVGGKRGRAQTAPTKTS
PRNAKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFY
LYDNAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGT
KYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWML
RHETSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDLSQTRETLQQALESLNMNGCSV
EDLGLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFES
VFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVGFLFDVLSSFD
AEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSSIEIMRKKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcacgggaaggttgcagtcagagcaggtaaaa
cataaaacaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagggggcacagctcaagaagtagcagtctgtcactg
tctgtggcttcatttgtgctgcaagacgacccagacgccgcagggacatccgagcgagag
ccaacaggtcaccaatccaagagtgaaggcaccacccgagggttgaagagaagttctgca
cctgatctcaacaacacctacacccccaccccagccaaaaagtccaaatcccaccctcca
cccagagaccataccactgagtccaagaaaggccctgccaagtcctccaagaagagaccc
ctggctccagagctgcccacgcccacaggccgcggccagagcagcaagagcggggcctct
ggggcctcaccaacccagaaacggaagaaggctgactccctccccggtctgagcagcact
gctgggtccctccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcg
aaatcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcttcttctgcc
tccacctcctcctcctcctccaccggcccaaacagtgccacctccacgcagggcgccagg
ctcaagcagggcaaagaccagaacaaggcacgtcgctcccgctccgcctccagcccttcc
ccacgccgaagcacccgcgacagggagcaggccaaagctgcagtctcgtccaagtttgag
tgggcctcccgcttcagtcccaaagtcaacctgccaaagcccaaattgtccctacctggc
tcctctaagcccgagacctcctccaaacctgggccctcaggactacaagccaaactagca
agtttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacgtcagaagaccacgggctcctgcgccagcaccagtctgtgcagtcgg
cgaggctcaggcctgggcaagcgcggggcagccgacgctcgccgacaagagaagatggcc
gactcggacaacaaccaggacggggccaactcctcggccgcccgcaccgacgaggccccg
cagggggcttcaggtacagcttctagttcagtggccggagctgtagggatgaccacatcc
ggtgagagtgagtccgatgactctgaaatgggcagactccaagccctgttggaggccagg
ggtctacccccacacctctttgggcccctgggaccccgtatgtcccagctgtttcacaga
accataggcagtggagccagctccaaagctcagcagctgctgcagggcctgcaggccacc
ggtgacgagtcccagcagctccaggccgccatcgagatgtgccagctgctggtgatgggc
aacgaggagacgctaggaggcttccctgtgaagagcgtggtgcccgctctgatcacattg
ttgcagatggagcataattttgacattatgaaccacgcctcccgtgctctcacttacatg
atggaggcgctgcctcggtcctctgctgtggtcgtggacgccatccctgtcttcctggaa
aagcttcaggtgatccaattcattgatgtggcagagcaggccctgactgccttggagatg
ttgtcaaggcgtcacagcaaagccatcctgcaggctggtggcctggctgactgtctgctg
tacctggagttctttagcatcaacgcccagaggaacgccctggccattgccgccaactgc
tgccagagcatcacccctgacgagttccactttgtctctgactctctgccactgctgacc
cagagactcacacaccaggataagaaatctgtcgaaagtacttgtctctgttttgccaga
ctggtggataactttcaacacgaggagaacctgctgcagcaggtggcctcgcgggacctg
ctgaccaacatccaacagctgctggtggtcaccccgcctgtgctcagctcgggcatgttc
attatggtggtgcgcatgttctccctcatgtgctccaactgcccctgtctggccgtgcag
ctcatgaagcagaatattgcagagactctgcgcttccttctgtgcggcgcggccaacggt
agctgtcaggagcagattgacctggtgccccggagcccacaggagctctatgaactcacc
tcactcatctgcgagctgatgccctgccttcctagagagggcatctttgctgtggacctc
atgctgaagaagggcagtgcccaggccacagagggggccatctggcagtggagggacgac
cggggcctgtggcacccctacaaccgcatcgacagtcgcatcattgagacggcccaccag
aacggagaggacgagatcagcctgtccaccctgggccgcgtctacactattgacttcaac
tctatgcagcagataaacgaggacactggcacagcacgtggtatccagaggaaacccaac
cccttagccaaccccactactgggggtcaccaggaggtgagacgggaggatgcacgggcc
cagctgatgaaggaggaccctgagctggccaagtgcttcatcaagaccctgttcggggtg
ctgtacgaggtgtacagctcgtcggccggcccagccgtcagacataagtgcctccgagcc
atcctcaggatcatcttcttcgccgatgccgagctcctcaaggacgtgctgagaaaccac
gctgtgtccagtcacattgcctccatgctgtccagccaagacctgaagattgtagttggc
tctctgcagatggccgagatcctcatgcagaagctgcccgacgtattcagtgtcttcttc
agaagagaaggtgttatgcaccaggtgaagaacctggctgagtcagaggccttccttacc
agtcccccaaaggcgtgcaccagcggcacagctagcctgtgtaccaccaccatcagcact
gcgaccactacggcggcctccaacgccaccccagacctgggctcgcctagcttccagcac
agcatggacgactcactagacctcagtccacaggggcggttaagtgatgtgctgaagaga
aaacgtctgcctaagagagggcccagaaggcccaagtactctcctcccagggatgatgac
aaagtagacaatcaggccaagagtcctaccactactcagtcccccaaatcctccttcttg
gccagtctgaaccccaagacctggggcaagctgggcgcccagaccaacagcaccaactct
gagccctctcgcacggccggggtgagcggcatggcacgcgccactcccaaggactcagtc
tccaacaacagggacaagatcaaggcctggatcaaagagcaggcctgtaagtttgtggct
cgctacttcaacactgaaaaaattgatggcagcaaccccgcactgaatgtactccagaga
ctctgcaccgccacggaacagctcagcctgcagatggacggtggtgtggagtgcctcgtg
gagatctgcagcatcgtgtcagagtcggacgtgtcgtcgttcgagatccagcatagcggc
ctggtcaagcagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgt
gacgttcgcctcaagaggttcctgcacgtcttctacggctgcccgatcccggggatggag
ccggcaggccgcctggagccgtctgagaacggacccctgctgtcactggtgcacaagatg
aacaactgcctaagccagatggagcagtttcctgtcaaggtgcacgacttccccagtggc
aacggcaatggaagcagagggtctcaggccctgaagttcttcaacacacaccaactcaag
tgtcagctgcagaggcacccggactgtaccaatgtgaagcagtggaaggggggcccggtg
aagattgatcccctggccttggtacaggcaattgaacgttacctggttgtccgaggttac
ggacgaatcagagaggaggatgaggacagtgacgatgatggttcagacgatgaaattgac
gaatcgttggcggcccagttcctgaactctggcagcgtgcgtcaccggctacaattctac
atcggcgaccacctgctgccctacaacatgacggtgtaccaggcagtgcggcagttcagc
ctgcagtccgaggaggagagagagtccacggacgacgaggccaacccgctcgggcgggct
ggcatctggaccaaaacccacaccatatggtataagccagtgagggatgatgaggatggt
actaaggatgcggtgggaggtaagaggggccgggcacagaccgcccccaccaagacctca
ccccgcaacgctaagaaacaggacgagctgtggcacgacggcgtgtgtcccagcgtggcc
agccccttggagatgtacctcatgtcagagcccccggagagcatcaccttcgacgacccg
tctctggatgtcaacctgctgctgagggtgctgcactccattagtagttactggttctac
ctgtacgacaatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaag
ctgacagccaaggccaaccgacagctgcaggaccctctggtcatcatgaccggcaacatc
cccacctggctcacagagcttgggaagacctgtcccttcttcttcccgttcgacacacgg
cagatgctcttctatgtaacagcgtttgaccgtgaccgggccatgcagcgcctcctcgac
accaaccccgagatcaaccaatcagattctcaggacagccgcgtggcgccccgcctcgac
aggaaaaagcgaacgataaaccgtgaggagctgctgaagcaggcggagtcagtgatgcag
gacctcggcagctccagagccatgctggagatccagtatgagaacgaggtgggcacaggg
ctgggtcccaccctggagttctacgccctggtctcccaggagctgcagagggccgacctt
gggctgtggaggggtgaggaggtcaccctgtccaaccccaaaggaagccaagaagggacc
aagtacatgttcagctcccgagggctgtttgccgttcccttcggcaggacaaccaaaccg
gcgcacatcgccaaaatcaagatgaagttccgcttcctgggcaagctgatggccaaggcc
ataatggacttcagactgctggacctgcctctggggctgcccttctacaagtggatgctg
cggcacgagacatccatcagctcccacgacctggtcaacatcgacccgggcgtggccaag
tccatccagcacctggaggatatcatccgccagaagaagaggctggagcaggacctctcc
cagacaagggagaccctgcagcaagctctggagagtctcaacatgaacggctgctctgtg
gaggacctgggcctggacttcaccctgcctggtttccccaacattgagctgaagaagggg
ggcaaggatgtccctgtcaccatctacaacctggaggagtacctcaggctggtggtctac
tggacgatgaacgaaggcgtgtcccggcagtttgagtctttcagggaagggttcgagtcg
gtcttccccctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgt
ggcagcaagtccgagacctgggacgtcaagaccctgatggagtgctgtcgtcctgaccac
ggctacacgcatgacagtcgtgctgttgggttcctgtttgatgtgctcagtagttttgac
gcagagcagcagagactcttcctgcagtttgtcacaggaagccccaggctgcctgttgga
ggtttccgtagtctgaacccgccgctgaccattgtgcggaagacttttgagtcaacggag
aacccggacgacttcctgccctcggtaatgacctgcgtcaactacctgaagctgcccgac
tactccagcatcgagatcatgcgcaagaaactgttgattgcggcccgagagggccagcag
tccttccacctgtcctga
DBGET
integrated database retrieval system
