Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382928
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Entry
139382928 CDS
T10872
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139382928
03036 Chromosome and associated proteins [BR:
ocla03036
]
139382928
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
139382928
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
139382928
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
Spt6_S1
SPT6_acidic
HHH_3
S1
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
139382928
NCBI-ProteinID:
XP_070983299
LinkDB
All DBs
Position
24:19006916..19034010
Genome browser
AA seq
1729 aa
AA seq
DB search
MDFIESEAEESEEEFGSTAYEEEEQENTEDQDEDGNLSGLIDDGVDEGEGEEEEEKEGKK
DKEGDSDSGEEIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDEEG
DDDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEQEDDEESDIDDFIVDDDGQPL
KKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEDADEESWDRPKKQTK
KRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAEWI
YRNAFSTLTISMQENADYLDRGPATTFSRKGPSTIQKIKEALNFMRNQHFEVPFIAFYRK
EYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLADGIR
PLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDGNE
KEVVEEEEEEEEEHPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLTPEQFGENLRDSYQ
RHETEQFPAEPMELAKDYICSQFSTAEAVLEGTCYMVAMQIAREPLVRHVLRQTFQERAK
INIKPTKKGKKDVDEAHYGFSFKYLKNKPVKELNGDQFLKMLQAEEEGLLTINVCIDLIG
VKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLIA
EAKENIIKACSRKLYNWLKVAPYRPDQQVEEEEDEELMSEAQGKGIRVLGVAFSSSRDTP
VFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSKKPHIIAIAGE
NRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQA
VSVARKIQDPLVEYAQVCSSDDDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDV
NRAMAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAG
FIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEIL
ENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLL
TKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVW
NHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIE
KLSVDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHP
SFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADNIYQHIDVREEGKENAFS
LGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRKKMEEVLVKSKKE
KPTFIPYYVSACRELPGKFLLGYQPRAKPRVEFVTVTPEGFRYRGQIFPTVNGLFRWFKD
HFQDPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQMFSAIAAVTGQ
GQNPNTTPAGWASSQYGYTGDSSGGGGSSSAYHVFATPAQQPIATPLLTPSYSYTTPTPS
QQQTITTPQYPSSTPQSSHGSQGHGHRPSSSTPTSSSSSRHHRTPTPKATSHTAVDWGKM
AEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagcgaagcagaggagtctgaggaggaatttgggagtacagcatat
gaggaggaggaacaggagaataccgaggaccaagatgaggatggaaacctcagtggtctg
attgatgatggtgtggatgaaggggaaggagaggaagaggaggagaaggaagggaagaaa
gataaggaaggagatagtgactctggggaggaaattggacaccataagaggaagagaagc
tttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttgggagtgaaa
gtgaaaaggcaaaagttccgtcgtttgcgagacatgtcggacgatgaggatgaggaggga
gatgatgacgtcagggaggcccatgagaaggacatgatagcggatgagatcttcatgggg
acgggagcggatgagggcgaggcattggatgtgcctttgcatcccggggaggatgagcag
gaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacagcccttg
aagaaacccaagtggaggaagaagctgccaggatatacagatgcagcacttcaggaggcc
caggagatattcggaggggactttgactttgccgagtttgacactgaagcctatgaagat
gcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcagaccaag
aagagggtgggccgacgcagtatctttgagatctatgagcccagtgagctggagagcagt
cacatgacggaccaggacaatgagatccgttccactgacatgccagagaggttccagttg
cgctccacttgtgtgaagcctgcagaggatgatgagttggaacaggaggctgagtggatc
tataggaatgccttctctactctcaccatctccatgcaggagaacgcagactatttggac
agaggtccagccactacattcagcagaaaaggccccagcaccatccagaagattaaagag
gctttgaatttcatgagaaaccaacactttgaggttccgttcatagcgttctacaggaaa
gagtatgtggaacctgaactcaatatcaatgatctgtggaaagtttggcagtgggatgag
aagtggacccagctgaaaacccgcaaacagaacctgagacgcctgttccagaagatgcag
ggataccagtttgaacagatctcagcagacccagataagccactggctgatggcattcga
ccattagacacttcagatttagagcggctgaaggatgtccagtctagtgatgaactgggc
gacgtctacaaccatttcctgctgtactatggccgggatatcccaaagatgcagaatgca
gccaggtccagcaagaagaagctgaagaagatcaaagaagtggatgaagatggtaatgag
aaggaagtagtagaggaggaagaagaggaagaagaggagcacccgaaggggccggacctg
aagcttgcatctcgcagggatatgtacagcatctgccagggtgcaggactggatggccta
gccaagaagtttggtctgactccagagcagtttggagagaacctacgtgacagttaccag
cgtcacgagacggagcagtttcctgctgagccaatggagctggctaaggactacatctgc
agccagtttagcacagcggaggcagtactggagggaacttgctacatggtcgccatgcag
atcgctcgggagcctctagtcagacatgtgctccgacagacattccaggagagagccaag
atcaacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggcttc
tcctttaaatacctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaag
atgttgcaggcagaggaagagggcctgctcaccattaacgtctgtattgacctgattgga
gtgaaggggtacggaggtgaccaggcatactatgaagagataaagcagttttactacaga
gatgagttcagccaccaggttcaggagtggaacagacagcgcactctggctatcgagcgc
tccctcaaacagttcctttacccgcagatggcgaaagagctgaagaacaaacttattgca
gaagcaaaggagaacatcatcaaggcctgcagcaggaagctgtataactggctgaaggtg
gcgccctatcggcccgaccaacaagtggaggaggaggaggacgaggagctcatgtctgag
gcccagggcaaagggatccgcgtgctgggagtggccttctcatccagcagagacacccca
gtgttctgcgccctggtgaatggtgacggagaagtaggggatttcctcaggcttccttac
ttcctgaagaggaggaacgcatggagggaggatgaaagggagaaaaagatccacgatatt
gaaaccctaaagaagtttctgaacagcaagaagcctcacatcatcgctatagctggggag
aacagggatgcccagatggtgattgaggacattaaacgcactgccagtgagctggagcag
gagtcctctttccccaccattggggtggagctggttgacaatgaactggccatgctctac
atgaacagcaagaagtcagaggcagatttccgggactacccccctctcctgagacaggct
gtgtctgtggccaggaagatccaggaccccctggtggagtatgctcaggtgtgcagcagt
gacgatgacatcctctgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggac
ctgctgaatgctctgtactgtgagttcatcaaccgggtgaatgaagtgggtgtggatgtg
aaccgggccatggcccacccctacacccagagcctgttgcagtacgtctgtggcctgggg
cccaggaagggatcccacctgctcaggatcctgaagcaaaataacactcgtctggagaac
cgcactcagctggtcaccatgtgtcacatgggccccaaggtcttcatcaactgtgctggt
ttcatcaagattgacacagcttctctgggcgatagtactgactcctatattgaggttctg
gacgggtcacgggtgcacccagagacctatgagtgggccaggaagatggccgtggacgct
ctggagtacgatgagtcagcggaggacgccaacccagccggagcactggaggagatcctg
gaaaacccagagcggctcaaagacctggacttggatgccttcgctgaggagctggaaaga
cagggttatggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgcagg
tacaaagacctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctc
accaaggagacaccagagaccttctacatcggtaaacttattaccagtgtggtgacaggc
attgctcaccggcgcccccagggggagagttatgaccaggccataaggaatgatgagaca
ggtctgtggcagtgtcctttctgtcagcaggacaactttcctgagctcagtgaggtgtgg
aatcattttgacagtggctcctgccctggccaagctattggggtccgctgtcgcatggac
aatggagtcaccggctttatccctaccaagttcctcagtgacaaagtggtcaagcatcct
gaagaaagggttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgag
aagctcagtgtggatctgacctgtcggacgtcagacctgtcggataagaacaacgactgg
aagcttcccaaggacacctactacgactttgacactgagacagaggatgtgaagcaggag
gaggaggccaagaagaaacagcagagaacaacctacattaagagggtgatagcccaccca
tcgttccataacatcaacttcaagcaggcagagaagatgatggagtccatggaccaggga
gatgtgatcatcaggcccagtagtaagggagagaaccacctgactgttacttggaaggtt
gctgataacatctaccagcacattgacgtacgagaggagggcaaggagaacgccttcagc
ctgggacataccctgtggatcaacactgaggaatttgaagatctggatgaaatcacagcc
agatacgttcaaccaatggctgcgtttgctcgcgatctgctcggtcacaagtattttcaa
gaatgcaatggtggagaccgaaagaagatggaggaggtcttggtgaaaagcaagaaggag
aagcctacattcatcccctactatgtgtctgcctgtagagagctgccagggaagtttctg
ctcggttaccagccccgcgcaaagccaagggttgagtttgtgactgtcacgcctgagggg
ttcagatacagaggacagatttttcccacagtcaatggacttttccgatggttcaaagac
catttccaggatccagtggcagggattactcccagcagcagcagtagaacacgaacccca
gcctctgtcaatgccacgccagccaatattaacattgcagatctcactcgtgcagtgaac
gccctccctcagaacatgacctctcagatgttcagtgccattgccgctgtaacgggccag
ggccagaaccccaacaccacacctgccggttgggcatccagccagtacggctacactggg
gacagcagcggtggggggggcagcagcagcgcctatcacgtgtttgctacaccagctcag
cagcccattgctactccccttctgacgccaagctattcatacaccacccccacccctagc
cagcagcagactatcaccacaccccaataccccagcagcactccccagtcctcacacggg
tcacaaggacatggacaccgcccttcctcctccacaccaacatcatcatcctcttcccgc
caccacaggacaccaacaccaaaggcaacttcccacacagcagtggactggggcaagatg
gccgagcagtggctccaggagaaagaggcagagcgcaagaagacgaggcccagaatgacc
ccacgaccttctcccagccccatgattgagagcacgcccatgtccctcgctggagacgcc
acaccgctgctggatgagatggatcgctag
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