Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382952
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Entry
139382952 CDS
T10872
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04110
Cell cycle
ocla04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
139382952
04114 Oocyte meiosis
139382952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139382952
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
139382952
Meiosis-specific proteins
Cohesin complex and associated proteins
139382952
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_29
Motif
Other DBs
NCBI-GeneID:
139382952
NCBI-ProteinID:
XP_070983330
LinkDB
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Position
2:85183360..85201049
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AA seq
1236 aa
AA seq
DB search
MGFLKQLDVDNFKSWRGKQVIGPFKRFNCIIGTNGSGKSNVMDALSFVMGERAATLRVKH
TRDLIHGAHIGKPVSTTASVTMRYCDDNGEELNFCRSISGDSSEYRINGRQITLAKYTEE
LEKIGIVTKARNCLVFQGAVESIAMKNPKERTKMFERISQSLELSDDYDRKKEALQKAKE
DTQFHFNKKRTATAEKKQVSSEKVEAQKYQELVDDLNQGRLQLNLFQLYHNQQGLSALSK
TLRKRQEAVAGQKTGLNGWEQSVKAQKKEHGRFTRELQQIEKEIRGQEQTLSLRRSQYIK
AKVNTSHHLKKVDDTRGALEKSQRMGAKKEEELAEFHQELQELERAWRDYERHAQEELTN
RKADIQLEEEQLERYKELKELARKQGALLSQQAKKMHWEVKADHQKIEFDQRRKKEVEVS
IKHSQTQLGDFTRRADKLEEYTNTCKSSLEESRQQEEVLSAELQRGRVRGEEVNQELGEV
LGELQNARLDSQESKRQQQRNEVLENLLRLYPDTLFGRLVDLCSPIHKKYQLAVTKVFGR
YMNAIVVSSEKVARDCIRFVKEERAEPETFLPIDYLDVSPLNERLRGVRGAKMMVDVVQC
SPTAPQLKKVIQFVCGNALVCETLKEARAIAFDGPERLKTVALDGTMFSKSGVISGGSSY
LRSKARRWDEKDMTKLKELKEQLTAELRGLVKLKRKEPELKQIQSQAQGVQTRLKYSHTE
LDTLRKKSIPNCHAEMSRLEAELANVESQLEMQKENMEIKELEMKKLQDRINQMEDVVFS
DFCAEIGVANIREYEQEHLKQQQDVDRKRLEFESQRTCLKAQLEYEQGQLEQQRKKMKKL
EETIVLEQCRVEEQKQEEEKLLVVMEESQSKVLDLKNHLLEKKTQASDSKAQVDQTMKSL
QESSREQVKLQREVISAETALEQLRIWKHNLLLGCKIQGLPITLLSGSLDEISEVQLDSE
SLTESTCTTMDIYEREALMVIDYSGLGAELKDLAGEEVDPQVERLKETVSSLEGVLQRST
APNLKALEKMRVVKDKFQGVVDAFDASSKAARRSNQEFEQVKAKRFRLFSQCFEHVSVVI
DQIYKQLCRNTSAQAFLSAENPDEPYLDGINYNCIAPGKRFMAMDNLSGGEKAIAALALV
FAIHSFRPAPFFVLDEVDAALDNTNIGKVTSFIREQSRESLQIIVISLKEEFYSRADALL
GVYPEFNECMFSRMLTLDLSPYPLNEENGTEREKEM
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgggttttctaaagcagttggatgtggataattttaagtcttggcgagggaagcaagta
attggaccttttaaaaggtttaactgtattattggcacaaatggatccggtaagtcgaac
gtgatggatgccctgagcttcgtgatgggggaacgggcagcgactctccgcgtgaagcac
accagggacctcatccacggagcccacattggcaagccggtgtccaccaccgccagcgtc
accatgcgctactgcgacgacaacggagaggagctcaacttctgtaggagcatatcgggg
gactcctctgagtatcgcatcaatggcagacaaattacccttgccaagtacacagaggaa
ctggagaagataggcattgtgactaaagctagaaactgtctggtattccagggggcggtg
gagtccatcgccatgaagaaccccaaggagcggaccaagatgtttgagcgcatcagccag
tctctggagctgtctgatgactatgacaggaagaaggaggctttgcagaaggctaaagaa
gacacgcagttccacttcaacaagaagaggacagccaccgcagagaagaagcaggtctcc
tcagagaaagtggaggcccagaagtaccaggagttggtggacgacctgaaccaggggagg
ctgcagctaaacctgttccagctgtaccacaaccagcagggcctgagtgccctgtcaaag
accctgaggaagagacaggaagctgtggccggtcagaagacaggactgaatgggtgggag
cagagcgtcaaggcccagaagaaagaacatggacgctttaccagagagctgcagcagatt
gagaaggagatccgtgggcaggagcagaccctgtccctgcgtcggtcccagtacatcaag
gccaaggtgaatacatcccaccacctaaagaaggtagatgatacccgtggggccctggag
aagagccagaggatgggtgccaagaaagaggaggagctggctgagttccatcaggagctc
caggagctggagagggcctggagggactatgagagacatgcccaggaggagttgaccaac
cggaaggctgacatacagctggaggaggaacagttggagcgctataaggagctgaaggag
ctggccaggaagcagggggccctcctgtcccagcaggctaagaagatgcactgggaggtc
aaggctgaccaccagaaaatcgagtttgaccagcggaggaagaaagaagtggaggtaagc
attaagcacagccagactcagctgggggacttcaccaggagagcagataaactggaagag
tacaccaacacctgcaagagctctctggaggagtctcgtcagcaggaggaggtgctgtct
gcggaactgcagagagggagggtgaggggggaggaggtgaaccaggagttaggggaggta
ctgggagagctgcagaacgccaggctggacagccaggagagtaagaggcagcagcaacgc
aacgaggtcctggaaaacctcctcagactctaccctgacacactgtttggtcgtctggtg
gacctgtgcagccccatccataagaagtaccagctggccgtcaccaaggtgtttggacgc
tacatgaacgccatagtagtgtcgtcagagaaggtggctcgggactgcatccgctttgtc
aaagaggagagggccgaaccagaaaccttcttacccatagattacctggacgtgagccct
ctgaatgagcggctgcgtggggtgcgtggagctaagatgatggtggacgtggtgcagtgt
tcccctaccgctcctcagctgaagaaagtcatccagtttgtgtgtggcaacgctctggtc
tgtgagacgctcaaagaggccagagccatcgccttcgacgggcctgagcgactcaagacg
gtggctctggacggtaccatgttctccaagtcaggggtgatctctgggggctccagctac
ctgcggagcaaggcccggcgctgggacgagaaggacatgaccaagctgaaggagctcaaa
gaacagctgactgcagagctacgtggtctggtgaagctgaagcgtaaggagcctgagctg
aaacagatccagtctcaggctcagggggttcagacccgtctgaagtactcccacactgaa
ctggacaccctccgcaagaagagcattcccaactgccacgcggagatgtctcgcctggag
gctgagctggccaacgtggagtctcagctggagatgcagaaagagaacatggagatcaag
gagctggagatgaagaagctccaagacaggatcaaccagatggaggacgtggtgttctca
gacttctgtgctgagataggagtggccaacatcagggagtatgaacaggagcatctcaaa
cagcagcaggatgtagacaggaaacggttggagtttgagtctcagcggacctgtctgaag
gcccagttggagtatgaacagggtcagctggagcagcagaggaagaagatgaagaaacta
gaggagaccatcgtcttggagcagtgcagagtggaagaacagaagcaggaggaggagaag
ctgctggtggtgatggaagagagtcaatctaaagtgttggatctgaagaatcatctgctg
gagaagaagacccaggcttctgactctaaggcccaggtggaccaaacgatgaagagcctt
caggagagctccagagagcaggtgaagctgcaaagggaggttatctcagctgagacagcc
ctggagcagttgaggatctggaaacacaacctactgctaggttgtaagatccagggcctg
cccatcacgctgctgtctggcagcttggacgagatcagtgaggtgcagctggactcagag
tcactcacagagagcacctgcaccactatggacatctacgagagagaggcgctgatggtc
atcgactactctggcctgggagctgagctgaaggatcttgcaggggaggaggtggacccc
caggtagagcgtcttaaggagacagtgtcctctctagagggggtcctacagcgctccaca
gcccccaaccttaaagccctggagaaaatgagggtggtcaaggacaaattccagggggtg
gtggacgcgtttgatgccagcagcaaggcagccagaaggagtaaccaggagtttgagcag
gttaaagccaaacgcttcagactcttcagtcagtgctttgaacacgtctctgtcgtcatc
gaccagatctacaaacaactgtgcaggaacaccagcgctcaggcctttctgagtgctgag
aacccagatgagccctacctggatggcatcaattacaactgtattgctcctgggaaacgc
ttcatggccatggacaacctgtctggaggagagaaggccatcgctgccctggctctggtg
ttcgcaatacacagcttccgtccagctccgttctttgtcctggatgaggttgatgcagcc
ctggacaacaccaatattggcaaagtgaccagctttatcagggagcagtcgagagagagc
ctccagatcatcgtcatctctctgaaggaggagttctactctagagctgacgctctgctg
ggggtctaccctgagtttaacgagtgcatgttcagccgcatgctgacgctggacctaagt
ccctatcccctgaacgaagagaacggaacagagagagagaaggagatgtaa
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