Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383034
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Entry
139383034 CDS
T10872
Name
(RefSeq) hepatocyte nuclear factor 1-beta-A-like isoform X1
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139383034
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139383034
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
139383034
NCBI-ProteinID:
XP_070983428
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Position
24:complement(19354936..19375659)
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AA seq
581 aa
AA seq
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MFSKMVSKLTSLQQELLSALLDSGVTKDVLIQALDDMDPSPNGFGVKLENLHMSPPSSKI
NGNDSDSKPVFLTLSNGHGKGKLSGDEGSEDGDDFDTPPILKELQSLNTEEAAEQRAEVD
RILAEDPWRAARIIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTW
YVRKQREVLRQFNQAVQGSVNNMTDKGSQDQVLFFFPEFNPPGQGMGQQGEEVGSEPSCK
KMRRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSN
LVTEVRVYNWFANRRKEEAFRQKLAMDAYPIPIHSMNPLLSHSHSSPHHHSSQTSASPPS
KMQVRYSQQGPSEVSSSTTISHHGSMSTSQSVLQQVSPGGLDPSHSLLSPDAKMMSASGG
GLPPVSTLTNIHSSHHTHQQTQNLIMPLSGVMTIAQSLNTSQSQSVPVINSVAGSLAALQ
PVQFSQQLHSPHQHGLMQQSPSQQPFMATVTHSHSQYLPLMYPHKQEPTQYSHQSRFPSA
MVVTDANSLSTLSSMSSSKQDSTVNKMVQLGGLSWCPLQAW
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgaaaatggtgtccaagttgacatctctccaacaggagctcttgagcgccttg
ttagattccggagttaccaaagatgttctgatccaagcgttggacgatatggatcctagc
ccgaatggctttggagttaagttggagaatctacacatgtctccgccaagttctaaaatc
aacggaaatgattcggattcgaagccggtatttctaacgttgagcaacgggcacggtaag
ggcaaactgtcgggagacgaggggtccgaggacggagatgatttcgataccccaccgata
ctaaaagaactccagtcgcttaacacggaggaagcagcggagcagagggcagaagttgac
cgaatattagctgaggacccgtggcgtgccgctcgcataattaaaggctacatgcaacag
cacaacataccacagcgcgaggtggtggacgtaaccggactaaatcagtctcacctctca
cagcacctcaacaaaggcacgcccatgaaaactcagaagcgagcggcgctctacacctgg
tatgtcaggaaacagcgggaagttctcagacaattcaaccaggcagtgcaaggttctgtc
aacaacatgactgacaaaggcagtcaggatcaggtgctgtttttcttcccagagttcaac
cctcctggtcagggtatggggcagcaaggggaggaggtgggctctgaaccttcctgcaag
aaaatgagacggaaccgtttcaaatgggggcctgcatcccaacagatcctctaccaggcc
tatgaaagacagaagaaccccagcaaagaggagcgagaggctctggtggaggagtgcaac
agggctgagtgtctccagagaggggtgtctccgtctaaagctcatgggctgggctctaac
ctggtcactgaggtacgggtctataactggtttgccaaccggcgtaaggaggaggccttc
cgtcagaagctggcaatggacgcctaccccatacccatccacagcatgaaccctctcctg
tctcacagccacagctctccacaccaccacagctcccagaccagcgcatccccccctagt
aagatgcaagtgcggtacagccaacagggacccagtgaggtcagctcctcgacgaccatc
agccaccatggcagcatgtcgaccagccagtcggtgttacagcaggtgtctccgggtggc
ttggaccccagccacagtctgctgtcacctgatgccaagatgatgtctgcgtcaggtgga
ggcctgccacctgtgagcacgctgaccaacatccacagctcccaccatacacaccagcag
acacaaaacctcatcatgcctctctctggagtcatgaccattgcacaaagtctgaacacg
tcgcagtcccagtcggtgccagtgatcaacagcgtggcagggagccttgcagctctgcag
ccggtgcagttctcccagcagctccacagtccccaccagcatggcctgatgcagcagtcc
cccagccagcagcctttcatggccaccgtgactcactcacacagtcagtacctgcctctt
atgtaccctcacaagcaggagcccacgcaatattcccaccagtcacggtttccctcagcc
atggtggtgacagacgccaacagcctcagtactctcagctccatgtcatccagcaaacaa
gattctaccgtaaacaagatggtgcaactggggggtctctcctggtgtcctcttcaagcc
tggtga
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