KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383115
Entry
139383115         CDS       T10872                                 
Name
(RefSeq) lissencephaly-1 homolog A
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla00565  Ether lipid metabolism
ocla01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    139383115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ocla03036]
    139383115
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ocla04147]
    139383115
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    139383115
Exosome [BR:ocla04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   139383115
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_EML WDR90_beta-prop_4th LisH Beta-prop_SPT8 LisH_PAC1 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_RIG_2nd eIF2A Nucleoporin_N Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Pox_A_type_inc Beta-prop_WDR11_2nd ARMC9_LisH DUF2570 LisH_2 SutA-RBD
Other DBs
NCBI-GeneID: 139383115
NCBI-ProteinID: XP_070983533
LinkDB
Position
24:17709046..17790735
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPIAQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTILEATGSE
SKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGMLVHPGGKFILSCADDK
TLRIWDYKNKRCMKTLSAHEHFVTSLDFHKNAPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctgtcacaacggcaacgagacgaactaaatcgagcgatagctgattatcttcgt
tccaatggatatgaagaggcttattcaactttcaagaaggaggcagaattagacatgaat
gaagaattggataagaagtacgctggccttttggaaaagaaatggacctcagtcatcaga
ttacaaaagaaggtgatggagctggagtcaaagctgaatgaggccaaggaggagataacc
ttgggtgggcccatagcccagaagcgtgaccccaaagagtggatacctcgcccgccggag
aagtacgcgctgagcggccatcgttcccccgtcacacgtgtcatcttccacccagtcttc
agtgtcatggtgtctgcctccgaggacgccacaataaaggtgtgggactatgagacagga
gactttgagcggacgctgaagggtcacacagactctgtccaggacatatcctttgaccat
actggcaagctgttggcctcctgctctgcagacatgaccatcaagctgtgggacttccag
ggctttgagtgcatcagaaccatgcatggacacgatcacaatgtttcatctgttgccatc
atgcccaatggagatcacatagtatctgcctcgagggacaaaaccattaaaatgtgggag
gtggccactggctactgtgtgaagacgttcacaggccacagggagtgggtgaggatggtc
cggcccaaccaggatggcaccctgatcgccagctgctccaacgaccagacggtgcgtgtg
tgggtggtggcatccaaagagtgcaaggctgagctgcgggagcacgaacacgtggtggag
tgcatctcctgggctcctgagagtgcccatcccaccatcttggaggccaccggctcagag
tctaagaagagtggtaagccgggccctttcctgctgtctggctccagagacaagaccata
aagatgtgggatgtcagcattggaatgtgccttatgacactggttggccatgataactgg
gtgcgcgggatgcttgtccaccccggaggcaagttcatattgagctgtgctgacgacaag
accttaaggatctgggactacaagaacaagcgctgcatgaagaccctgagtgcccatgaa
cattttgttacctctctggatttccacaagaatgctccgtacgtcgtcaccggaagcgta
gatcaaacagttaaagtgtgggagtgtcgctga

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