Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383141
Help
Entry
139383141 CDS
T10872
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139383141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139383141
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139383141
Complex C
U5 SnRNP specific factors
139383141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
139383141
NCBI-ProteinID:
XP_070983596
LinkDB
All DBs
Position
24:17100582..17125262
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPTQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDTNKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccttatcgaggggtacctggtggaatgcccccaggtatccacccc
ccaacccaggttccagattacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaggacatgccacctgagcacgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtctacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gttctataccacatcaccggagccatttcctttgtcaacgagatcccctgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgccgtgagaaaagggac
cgtcgtcacttcaagcgtatgcgtttccctccctttgatgacgaggaacctccgctggac
tacgctgataacatcctggatgtggagccgctggaggccatccagatggagctggatgca
gaagaggactcctctgtggcggagtggctctacgagcaccagccccttaaggacaccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgaccttgtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggccctcaacatggccatccctgggggaccc
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagattatcatcagacagccaatcaggacggagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactccaaacgtg
gttttcatcaagactgaggatcctgatttgccagcgttctactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagatgatgacgaggag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggcgccacgccccttcaatctgcgatctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcattgcccggcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgttccgttccttcaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggatacaacatgctgaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagccggtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtacagtacagactgggcaacgtggatgctttccagttggcagatggg
ctgcagtacatctttgcccacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccgcatgtgcaaggacctcaagcacctcatctactaccgcttcaac
actggtccggtgggtaagggtccaggctgtgggttctgggccccaggatggagggtatgg
ctgttcttcatgaggggcatcacccccctgctagagagatggctcggcaacctgctggcc
aggcagtttgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgcgtg
gagtcccactttgacctagagctgcgtgcagccgtgatgcacgacatcctggatatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcgtgg
cgctgctggaaggccaacattccctggaaggtcccaggcctgcccacccccatcgagaac
atgatcctacggtatgtgaaggccaaagctgattggtggaccaacacggcccactataac
cgcgagcgaatcaggcgcggcgccaccgtggacaaaacggtgtgcaagaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacagtccactggctg
gagagcagacgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagaacaggcttatgacaaccctcacgaggcc
ctgtccagaatcaaacgtcacctgctcacacagagagccttcaaggaggtgggcatagag
ttcatggacctgtacagccacctggtgccagtgtatgacgtagagcccctggagaagatc
acagatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctcctccactccttgtctacaagtggtgccaa
ggcatcaacaatctgcaggatgtgtgggagacgatggagggagagtgtaatgtgatgctg
gagtctcgctatgagaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgaccgccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctcgtcatggacctgttggtgctgggcctccaccgg
gccagtgagatggccggaccccctcagatgcccaacgacttcctgtccttccaagataca
gccacagagagcgcccaccccatccgcctctactgcagatacatcgaccgcatacacatc
tttttcaggttctcagctgatgaggccagggacctgatccagaggtacctgacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtccaatgggagaacagctttgtgtccgtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcag
aacgaggtgaccaaagagcgtacggcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtccgacagatactcatggcctcaggatccaccaccttcacc
aagattgtgaacaagtggaacacggctctgatcggtctgatgacgtacttccgcgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaagtgtgagaacaagatccagacc
cgtatcaagattggcctcaactccaagatgcccagtcgcttcccccctgtcgttttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tcggatctgaggtggtcgaagcagactgacgttggcatcacccatttccggtccggtatg
agccacgaagaggaccagctgattcctaacctgtaccgttacatccagccctgggagagt
gagttcatcgactcccagagagtctgggcagagtacgcactgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttggaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcggcatgacgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacgctcttcaaagggacctacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaacgcccagagatctggtctgaaccagatccccaaccgtcgcttcaccctctgg
tggtctcccaccatcaacagggccaacgtgtacgtgggtttccaggtgcagctggatctg
accgggatcttcatgcacggaaagatccccaccctgaagatctccctcatccagatcttc
agggctcacttgtggcagaagatccacgagagcgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagattgagacagtgcagaaggaaaccattcaccccagg
aagtcctacaagatgaactcctcctgtgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgccgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggatcgacatacagcttcgctggggagactacgactctcacgacatcgag
cgctatgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtacggtaac
tggttcccgggaggcaagcctcttatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtatgtcctgagggagcgcatccgtaagggtctgcagctctactcctcagag
cccactgagccctacctgtcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctaccgtgtcaccatccacaagacgtttgagggtaac
ttgaccaccaagcccatcaatggagccatcttcatcttcaaccccaggacaggtcagctc
ttcctcaagatcatccatacctctgtgtgggccggacagaaacgtctgggacagctggct
aagtggaagacagctgaggaggtggctgctctcattcgttccctacctgtggaggagcag
cccaaacagatcattgtcaccaggaagggcatgctggatccccttgaggtgcacttgctg
gacttccccaacattgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctcttc
aacctgtacgacgactggctcaagaccatctcctcctacaccgcattctcacgtcttatc
ctgatcctaagagcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagcctgat
aagaccaccatcacagagcctcaccacatctggcccacactgaccgacgaggagtggatc
aaggtggaggtgcagcttaaagacctcatcctggccgactatggaaagaagaacaacgtc
aacgtggcgtctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagatcgctgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacgcagacacgcacagtcaacaaacatggagacgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacaggttacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagatcaggtgtatcgtcatggtaccccagtggggaactcatcagaccgtc
cacctacccaatcagctgcctggtcacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctccccagctctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggacggagagaagaccatcatcatcacctgcagt
ttcactcctggctcatgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctttctgaccgcttcctgggcttcttcatggtgcctggacaggtt
tcctggaactacaacttcatgggtgtccgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggagttctaccacgaggtccatcgcccctctcacttcctcaacttc
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
DBGET
integrated database retrieval system
