Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383335
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Entry
139383335 CDS
T10872
Name
(RefSeq) nidogen-2 isoform X1
KO
K06826
nidogen (entactin)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139383335
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139383335
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
EGF-like domain-containing proteins
cEGF domain-containing proteins
139383335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Thyroglobulin_1
G2F
NIDO
EGF_3
EGF_CA
Ldl_recept_b
cEGF
EGF
hEGF
FXa_inhibition
EGF_MSP1_1
SGL
Vgb_lyase
Motif
Other DBs
NCBI-GeneID:
139383335
NCBI-ProteinID:
XP_070983938
LinkDB
All DBs
Position
25:complement(1621453..1712643)
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AA seq
1692 aa
AA seq
DB search
MAMGKLMIFLLQLSWTVHLVTAIQRKDIFPYGTLSGDLTLQEGDDETSKVLALKRPLYFY
ESQFNELYVATNGIISAQDLPMEKQYVDDGFPTDFPVIAPFLADIDTSQGNGAIYYRVTE
SPTLLNRVAQEVHRAFPGGHFTPTHAVIATWENVAAYEEVTRATGPSDRLNTFQAVVAYD
ENDSYALFLYPEDGLHFFGTRPKESYNVEIELPARVGFSRGEVSFIFSRMEGPYYSVTSN
EQSLKNLYQVGNTGVPGVWLFHIGNRYSFENVVPAAVGGALATPPPRGQEGDDSTTAGYS
ELEYPETFEEEPDEDYPPIADPDFQSPTIPEFLQPSHLDHGALPGQARLQPYGGDLPLTS
DPQYREHDNHGKPPPASGPSGPGEYPAKYPAREPEPRNQPHQPPLEDVKQQQQLQPQAQA
PQVVPRPEHTVLEVFPNNRGESSPHMESDPPLAPHGGHFVSVVEEEDVDFDTGVIQYSTE
TKETCARFQQQCSQNADCTDYSSGFCCHCRSGFYGNGRHCLPDGAPHRVNGKVSGTVIVG
STPVDLNSVDLHAYIVVSDGRAYTAISEVPEPVGWALMPVAPIGELFGWLFALELPNSQA
GFKITGAEFTRHAEVTFYPGNQRLSIVQTAQGLDSENHLSVDTRLHGDVPFIAPGATVQM
EPYKETYQYYPSVVRSTSVREFTVVSAERGSETFTFQLHQNITYHDCRYGPRAGPETLQL
TTERVFVMYVKDENILRYAITNKISPVGEPVQVNPCYSGTHDCDTTAQCLPGEGQQYQCQ
CATGYMGDGRNCYDVDECVEGLSLCGAHAQCVNLPGSHRCQCQSGYKFGFDGRTCIDVDE
CVEGIGLCGANAHCVNLPGSHRCQCQSGYEFDIDGRTCIDLDECRSQPCHPQATCSNTLG
SFQCQCQYDFQGDGFQCVPSNGHPERPKTQCEQHRDSLQGGLSPRGPRPVPGSLAPGAFV
PQCDEQGQYRALQCHGSTGHCWCVDSRGQERAGTRTLPRTPPTNCDRPDHTERPKTQCEH
HRDSVQTTSPEGYSIVEGFLPQCDEQGQYRALQCHGSTGHCWCVDNRGQERAGTRKPPGT
GQPNCDEPDLPERAKTHCEQHKDSVQTISPEGYPIPGVFVPECDEQGQYRALQCHGSTGH
CWCVDSRGQERAGTRKGPGTSQPNCDEPDRPERPKTHCEQHKDSVQTTSPEGYPILGVFV
PECDEQGQYRALQCHGSTGHCWCVDSRGQERAGTRKGPGTGQPTCDEPDHPERPKTHCEH
QRDSLQTTSPEGNVDGAFVPQCDEQGQYRALQCHGATGHCWCVDSRGQERAGTRKPPGTS
QPNCDEPAVVPPTQRPETVCERWRASLVDHYGGLPRPHHYLPQCDPQGQFNPIQCYGDSS
YCWCVDRDGREVAGTRSHDVVKPACVPTVAPPTMHPLPRPDVTPPPSGTSLLYAQGQQIG
ALPLNGTLMDSERSSTLLALHGSIVVGIDYDCREKKVYWTDLAGRTINRARLEPGAEPET
LINTGLTSPEGLAVDVVRRAMFWVDSTPDKIERANLDGSGRQTLFDTDMVNPRAIIVDSS
TGTLYWTDWNREAPKIERSSVDGHSRKVLVKDGIGLPNALTFDTATRQVCWADAGTKRLE
CIASDGTGRRVIHSNLNYPFSMVFYANHFYFTDWRRDGVIALSRDSSQFTDEYLPDQRSH
LYGVTIATTHCL
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgggaaaattaatgatatttctacttcagttgtcgtggactgttcatcttgta
acagccattcagaggaaagatatatttccttatgggacactgagcggcgatttgactcta
caggagggggacgacgagacgtccaaagtactcgcgttgaagagacctctctatttctat
gagtcgcagttcaatgagctatacgtggcaaccaatggcatcatctcagcccaggacctg
cctatggagaagcagtatgtggacgatggcttccccaccgacttccccgtcatcgccccc
ttcctggcagacattgacaccagccaggggaatggtgccatctactaccgagtcaccgag
tcgcccacccttctcaaccgggtggcacaggaggtgcaccgggccttccccggcggccac
ttcacacccacgcatgccgtcatcgccacctgggagaacgttgccgcatatgaggaggtg
acgcgtgccaccgggccatccgatagattgaacacgttccaggcggtggtggcctacgat
gagaatgactcctatgccctcttcctctaccccgaggatggactgcatttctttgggacg
cgccctaaagagtcctacaatgtggagattgagctgccggctagagttggctttagcagg
ggagaagtgtccttcatattttctcggatggaaggaccctactacagcgtcaccagcaat
gagcagagtctaaagaacctctaccaggttggtaatactggcgtacctggtgtttggctc
ttccacatcggcaaccgctactccttcgagaatgttgtgcccgccgctgtgggtggtgct
ctcgccacgccacctcctagaggccaggagggcgatgacagcaccactgcagggtactca
gagttagagtaccccgaaaccttcgaagaagaacccgacgaggactacccacccatcgcc
gaccctgacttccagtcccccactatcccagagttcctccagccctcacacttggaccat
ggcgccctcccgggtcaagcccgcctgcagccctatggaggtgaccttcctttaacctct
gacccccagtatcgtgaacatgacaaccatggcaagccacctccagcatccggtccgtcg
ggtccaggggagtacccggccaagtacccagcccgggagcccgagcccaggaaccagccc
caccagccccctctggaggacgtgaaacaacagcagcagctccagccccaggcacaagcc
ccccaggtggtccctcgaccggagcacacggtcctggaggtgttccccaacaacagggga
gagagcagccctcatatggagagcgatcccccacttgccccccatggcggacattttgtt
agcgtggtggaggaggaggacgtggactttgacacaggagtgatccagtacagcacagag
accaaggagacgtgtgctcgcttccaacagcagtgttctcagaatgctgactgcaccgac
tactcttccggcttctgctgccactgtcgctccggtttctacggcaacggtcgtcactgt
ctacctgacggtgctccccatcgcgtcaatggcaaggtgagcgggacagtgatagtaggt
tccacccctgtggaccttaacagcgtggacctgcatgcctacatcgtagtgagtgacggg
cgggcatacaccgccatcagcgaggtgcccgagcccgtgggatgggcactaatgcctgtg
gcgcccatcggagagctctttggctggctttttgccctggagctgcccaacagccaggct
ggcttcaagatcacaggtgctgagttcacacgccacgccgaggttaccttttaccccggc
aaccagcggctgagcatcgtccagacggcccaaggattggacagcgagaaccacctcagt
gttgacacccgtctccacggcgacgtgcccttcattgcccccggcgccaccgtgcagatg
gagccctacaaggagacctatcagtactacccttcagtggtgaggtccacgtcggtgcgg
gagttcacagtggtgtcggcggagcgcggctcggaaacattcacctttcagctgcatcag
aacatcacgtaccacgactgccgctacgggcccagagcggggcctgagacgctgcagctg
accacggagcgtgtctttgtcatgtacgtcaaggacgagaacatcttgagatacgccatc
accaacaagataagcccagtcggagaacctgtccaggtgaacccgtgctactcaggaacc
catgactgtgacaccaccgcccaatgtctgcccggagagggccagcagtaccagtgccag
tgtgccactgggtacatgggtgacgggcgcaactgttatgatgtggatgagtgcgttgag
ggtctcagcctgtgcggtgcccacgcccagtgtgtcaacctgccagggagccatcgctgc
caatgccagagcggctacaagtttggctttgatgggcgtacctgtatagatgtggatgag
tgcgttgagggcattggcctgtgcggtgccaacgcccattgtgtcaacctgccagggagc
catcgctgccaatgccagagtggctacgagtttgacattgacggacgtacctgtatagac
ttggacgagtgccgctctcagccctgccatccccaggccacctgctccaacactctgggc
tccttccagtgccagtgtcaatatgatttccaaggagacggcttccagtgtgtccctagc
aatgggcatccggagcgccctaagacacagtgtgagcagcacagagacagcctgcagggt
gggctgtctccccgagggcctcggcctgttcctggaagccttgctccgggggcctttgtc
cctcagtgtgatgagcagggtcagtacagagccctgcagtgccacggctccacaggacac
tgctggtgtgtggacagtagggggcaggagagagcagggaccaggactttgcccagaact
ccccccaccaactgcgacagaccagatcacactgagaggcctaagactcaatgtgaacac
cacagagacagtgtccagacaaccagtcctgaggggtactccatcgtggagggtttttta
ccccagtgtgatgagcagggtcagtacagagcactgcagtgtcacggttctacaggacac
tgctggtgtgtggacaacagggggcaggagagggcagggaccaggaaaccacccggtact
ggccagcctaactgtgatgaaccagatcttcctgagagggccaagactcactgtgagcag
cataaagacagtgtccagacgatcagtcctgaggggtaccctatcccgggggtctttgtg
cctgagtgcgatgagcagggtcaatacagagccctgcagtgccacggttctacaggacat
tgctggtgtgtggacagcagggggcaggagagagcagggaccagaaaaggacctggcact
agccagcctaactgtgatgaaccagatcgtcctgagaggcccaagactcactgtgagcag
cataaagacagtgtccagacgaccagtcctgaggggtaccctatcctgggggtctttgtg
cctgagtgcgatgagcagggtcaatacagagccctgcagtgccacggttctacaggacac
tgctggtgtgtggacagcagggggcaggagagggcagggaccaggaaaggacccggcact
ggccagcctacctgtgatgaaccagatcaccctgagaggcccaagactcattgtgaacac
cagagagacagtctgcagacaaccagtcctgaggggaatgttgacggggcctttgtacct
cagtgtgatgagcagggtcaatacagagccctgcagtgccacggtgctacaggacactgc
tggtgtgtggacagcagggggcaggagagggcagggaccaggaaaccacccggtacttcg
caacctaactgtgatgaaccagcggttgtgccccccacccagcggccggagacggtgtgc
gagcgttggcgggccagcctggtggaccactacgggggcctgcctaggccccaccactac
ctgccccagtgcgacccccaggggcagttcaaccccatccagtgctacggcgacagcagc
tactgttggtgtgtggaccgggacggccgcgaggtggccgggacgcgctcgcacgacgtg
gtcaagcctgcctgtgtccccactgtagcccctcccaccatgcaccctctgcctcgccct
gatgtgaccccgcccccctcaggcacctccctcctgtatgcccagggacagcagattggg
gcactgcctctcaatggcacactcatggactcggagcgctcctctacactattggctctg
catggctccattgtggtgggcatcgactatgactgcagggagaagaaggtgtactggacc
gacctggcaggcaggaccatcaacagagcaagactggagcctggggccgagcctgagact
ctcatcaacacaggtctaaccagtccagagggcttggcggtggacgtggtgcgcagagcc
atgttctgggtggatagcacgccggacaagatcgagcgtgctaacctggacggcagcggg
agacagactctctttgacactgacatggtcaacccccgtgctatcatagtggactcttcc
actgggaccctgtactggactgactggaacagggaggccccgaaaatcgagagatcctca
gtggatggccacagcaggaaggtgctggtgaaggacgggattggcctgcccaacgccttg
acctttgacacagccacgagacaggtgtgctgggcggatgcagggaccaagcgtctggag
tgcattgcgtccgatgggacgggtagaagggtgatccacagcaacctgaactacccattc
agtatggtgttctatgccaaccacttctatttcacagactggaggagggacggagtcatt
gctctgagtcgggacagcagccagttcacagacgagtacctacctgaccagaggtctcac
ctgtacggcgtcaccatagctaccacccactgtctataa
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integrated database retrieval system
