Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383453
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Entry
139383453 CDS
T10872
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
ocla04148
Efferocytosis
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139383453
04148 Efferocytosis
139383453
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139383453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139383453
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
139383453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
UN_NPL4
Beta-prop_HPS5
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
139383453
NCBI-ProteinID:
XP_070984103
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Position
25:complement(44021483..44068343)
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKNNAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFAAPDIPKSMAWCQNSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKYALNWTDIPIAME
HQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVPI
ASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKHL
NDSEPSTPSPLIEGIPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLV
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELTIPYLEHIIHVWE
ETEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLCFLEVST
SYEPGRLISDFPFDGLLEERAVLLGRMGKHEQALYIYVHVLKDTHMAEEYCHRHYDKETD
RSQDVYLSLLRMYLSPPDVHCLGPIKMELLDPQANLMAALHVLELHHSKLNTTKAIDLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctacgaaccggtccctatcctggagaaactgcctctgcagattgactgt
cttgctgcttgggaggactggcttctggtcggcactaaaccaggccatctcctgctctac
aggataaaaaataatgcaggtaccaacaggtttgaggtaactctggagaagtccaacaag
aacttctcaaagaagatccagcagctgtttgttgtgtcacagtacaagatcctcgtcagt
ctgttagagaacaacatccatgtccacgacctcttgaccttccagcagattactgtggtc
tccaaggccagaggggcaacgctcttcgcctgtgacctgcagcagtccccctcgggagaa
gcccagctgaggatgtgtgttgctgtgaagaagaagcttcagctgtactactggaaggac
agggagttctatgagctgcagggggactttgctgctccagacatcccgaagtccatggcc
tggtgtcagaactccatctgtgtaggcttcaagagagactactacctcatccggatggat
ggccgtggctccatcaaggagctcttccccacggggaagcagctggagcccctggtggcc
cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gagggggtctgcactcagaagtatgctctcaactggaccgacatccccatcgcaatggaa
catcagtccccctacatcatagctgtcctgcctcgctatgtggagatcaggacctttgaa
cccagactgctggtccagagtgtggagctgcagagaccacgattcatcacatcagctggg
cccaatatagtgtacgttgccagcaaccattttgtctggcgcctggtgcctgtgcccatc
gccagtcagatcagacagttactacaggacaagcagtttgaactggccctgcagctggcc
aatatgaaggatgacgtggaaggagataagagacagcagattcaccacatccagaatctc
tatgccttcaatctgttctgtcagaagaggttcgatgactccatgcaggtgtttgctaag
ctcggcacagatccgacccatgtgattggtctgtatcccgacctgctccccgctgactac
cgtaaacagctgcactaccccaaccccctgcccagtctgtctggagcagaactggagaag
gctcacctggcgctcatagactacctgacacagaaacgcagtcacctggtgaagcacctg
aacgactccgagccgtccaccccgtctcccctcattgagggaattccaaccatcaagagc
aggaagaaactcctgcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggcctgcatcagaaagccctacaggtgttgttagaccagtccaccaaggctaactctcct
ctaaagggacatgagaggacggtgcagtacctccagagactggggatggagaatctggtc
attatctttgagttctctccctgggttctgaagatctgtcccgaggacggactcaagatc
ttcactgaggacctgacggaggtagagaccctgcccagagacaaggtcctgaacttcctg
aaggagggctttaaggagctgactatcccctacttggagcacatcatacacgtctgggag
gagacggagccagagttccataacgtcctcattcagctgtacctggagagggtccagggg
ctcatgaagcagtacctcaactccctgcccgagggggttcctgcagtggctgctgggaag
gaggagggggacctgggagagtttaggaacaagcttctatgtttcctggaggtctctacc
agctacgagcctggacgtcttatcagtgacttcccctttgacggtcttctggaggagagg
gccgtgctgctgggtcggatggggaaacacgaacaggccctctacatctacgtacacgtc
ctgaaggacacacacatggcagaggagtactgtcataggcattatgacaaagagacggac
agaagccaagatgtgtacctgtctctactgcgcatgtacctgtcccctcctgacgtccac
tgtcttgggccaatcaaaatggagctgttggacccacaggccaatctaatggcagctcta
catgtcctggagctgcaccacagcaagctgaatacaactaaggccatcgacctgctgcca
gccaacactcagatcagagagatccgtgtgttcctggagagtgttctggaggagaaggct
cagaggaaacgctttgaccaggtcctcaagagtctgctgcaggccgagttcctacgggtc
caggaggaacgtatcttccaccaacaggtgaagtgcatcatcacagaggaaaagacctgc
agggtctgtaagaagaagatcggaaacagcgccttcgccaggtatcccaacggtgttgtg
gttcattacttctgctgtaaggaccgaggggtgtgtcctacggagcagtga
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