Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383467
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Entry
139383467 CDS
T10872
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139383467
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139383467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139383467
NCBI-ProteinID:
XP_070984114
LinkDB
All DBs
Position
25:complement(14710841..14750615)
Genome browser
AA seq
1509 aa
AA seq
DB search
MEEAKSMRLKLLLHRGRWGWLQSFWLSGSCSVPKQRFLFSLASYVYYKHVVQGVEKFVQK
CKPEYKVPGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRV
LNLWQKNAVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAAVNTPGTPATPATPANIVSSL
PDWASQFSNTDTVAAVAQILQSPHGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQA
LTAQLTAAATANPMQLNPLEQRISSFNKKMLGHFDFGNDTERSEDPKKDAQSSQMPMVSD
SIFHQLAEQLQQQNLEHFQKQLMEHQQKSMNMEGQDGIFGSENTAMPQQSSSQSQHPAPQ
NKTDDSIDNQQQDMDLDDGPEIEEERFEPEDKKSKTVATRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERQEAREREKERQKKGLPPIRSRFLSVCSTT
LWVGQVDKKASPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYCARQKLSTGSFK
VVSKIIKIAWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAE
WEAAKNAPEPMKEAVSQAVSVEPMTATNTQQTQQEAFSQQEAFSQQVSMMPVQLPVAQAV
PAVGLVPPSFPVSMAMPPPGYGPLPPFLRAGFNASQPPPGFMQTAGVPQQAGMGSAPISL
VPASMSQAQDSMKDSPYGATMPGSFMPSALPGQGVFNQLQPGVQTQQAANDKMGQSADGM
DAAAELVLQGMQNAMSRGMGLLGMHPSASLTHPLHQQGLPGQRMPGLMPLDLRPTMLQGA
GARFPLLMQQGLSQQSLLEASLHAQARARAASQMERFNRAEEAFNRGPNPPNESMSKAEE
EPSSGADDSQQGGDQDYRFPPPQEKQSTGLLRTPPLEHRESMGGGAGGGGLGGGRPALLQ
TPVREPARDSVAGRLQALAGFTPQTSSRWGPLRGDFDERDMRSSPAAVSKGFQEARPGSN
QGQNFPNRFENQNRAGSVGAVGGGVCTGGVGGGPAWSRGGVDAAAQFTDADMPQDLDECR
RPWDRQQRDRDFDFRKEMNGNRRERDSREKERERERERDRGRERGNREREQERDRERERE
KEREKDRERERERERNKRGAWTPLLPLPQPLLPTPTLTPTLSLTQGKPQALLQLQSKLQP
KPGLLTKPGLLQTPTLLTRSTSHVPTKSLLQAPSQSLLQAPSQSLLQAPSQSLLQAPSQS
LLQAPSQSLIQAPSQSPPLTSSQSLPKAPPQSTQFPTQAKNEARPGPKPQAEFHSSPQTH
VSPKSESSPQNQSPPQNQASLQAQLLHPAHSSFQTKSPPQGQSSSRAQSPPQALSLQTPR
TPEEITDTHGEPEKPGKPQEEPMKEPEPMVEPPSRWVNGTGSRMDTDAVAEPTTTPSPNP
ALSMSLVLTHSPVEPQCLPEPLDQQHPSQHVASCSSTKDVDNGLSEPMEEAEKQPVVEKT
DTEGTIITQ
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagccaaatcaatgagactcaaattgctccttcacagagggagatggggctgg
ctgcagagcttttggctctctgggtcttgttcagtacccaagcaacgctttctcttttct
ctggcttcatacgtgtactacaaacatgttgtccagggcgtggaaaaatttgttcagaaa
tgcaagccagagtataaggtcccaggcctgtatgtcatggactccatcgtgcggcagtca
cggcaccagtttggccaggacaaggatgtgtttgccccgcgcttcagcaaaaacatcatc
ggaaccttccaacatctctaccgctgcccctcagatgacaagagtaagattgtcagggtc
ctcaacctctggcagaagaacgccgtcttcaagagtgacatcatccagcctttgctcgac
atggctgcaggactgccccctcccagtgttaccccagtcatgaccagccgtgatgctgca
gtcaacacgcctggtacaccagcgactccagccaccccagccaacatcgtatccagtctg
cctgactgggcgtcacagttctccaacacagacactgtagctgctgtggcccagatcctg
cagagtccacacggccaacagctccagcagctggtgcagagcctgcaaatgcagcagcag
aagccccagccatctctgcttcaggcgttggatgcaggactggtggtccagttgcaggct
ctgacggcccagctcactgcagccgccacggccaaccccatgcaactcaaccccctggag
cagaggatctcctccttcaacaagaaaatgttgggccattttgactttgggaacgataca
gaacgctctgaagaccccaaaaaggacgcccaatcatcccagatgcccatggtgtctgac
tccatcttccaccagctggctgagcagctgcagcagcagaacctggagcacttccagaag
cagctcatggagcaccagcagaagtccatgaacatggaagggcaggatggaatatttggg
tctgagaacacggccatgccccaacagagcagcagccaatcacagcacccggcgccgcaa
aacaagacagacgactcaattgacaaccagcagcaggacatggacctggatgacgggcca
gagattgaggaagagcgtttcgaaccagaggacaagaagtccaagacggtcgccacgcgg
tcaagaacacgttctaggtcacgatcaagatctcccaggaagagacggtccagatcacgg
tcaggctctcggaaacggaaacaccgtaagcggtcgcggtcacgctccagagagcggaag
aggaagtcgtcgcggtcctactccagcgagagacaagaagcccgcgagcgagagaaagag
cgccagaagaaaggactgcctcccatccgatccaggtttctcagtgtgtgcagcaccact
ctgtgggtgggacaggtggacaagaaggctagtccgcaggacctcaccaacctgtttgaa
gagtttggtcagattgagtcgatcaatatgatccctcctcgtggctgtgcctacatctgt
atggtccacagacaggatgcctactgcgccagacagaaactcagcactggttcattcaag
gtcgtctccaagattatcaagattgcgtgggcgctgaataagggagtgaagcaggagtat
aagcagttctgggacatggacctgggggtcacctacatcccctgggagaaggtcaagttg
gacgacctggacggctttgctgagggaggcatgatcgaccaggagactgtcaacgccgag
tgggaagcagccaagaatgcgccagagccaatgaaggaagctgtgagccaggctgtgagt
gttgaacccatgacagccaccaacacccaacagacccaacaggaggctttcagccaacag
gaggccttcagccaacaggtctccatgatgcctgtacagctccctgtggctcaggctgtc
cctgccgtgggtcttgtgcctccatccttccctgtttccatggcgatgcccccgccaggc
tatggccccctgccccccttcctcagagcgggtttcaacgcctcccagcctcctccaggt
ttcatgcagacagcaggtgttcctcagcaagcaggcatgggctcagctcctatatctctg
gtgccggcctccatgtcgcaggctcaggacagcatgaaggactccccatacggagctact
atgccggggagcttcatgccctctgccctccctggacaaggggtcttcaaccagcttcaa
cctggagtccagacgcagcaagcagccaatgacaagatgggccaatctgctgacggcatg
gatgcagctgcagagttagtactgcaaggtatgcagaatgcaatgagtcgtggtatgggt
cttctggggatgcacccttcagcttcccttacccaccccctgcaccagcagggcctgcct
ggccagaggatgcctgggctgatgccgctggacctccggcctactatgctccagggtgcc
ggtgcccggttccccctcctgatgcagcagggcctgtcccaacagagcctcctggaagcg
tccctccatgcccaggcacgcgccagagcggcctcccagatggaacgcttcaacagggcc
gaggaggccttcaaccgggggcccaaccccccaaacgaaagcatgtccaaggctgaggag
gagccttcctctggagctgacgatagccagcagggaggggaccaagactaccgcttccct
ccgccccaggagaagcagagcacaggcctactgaggacccctcccctggagcatagagag
tccatgggtggaggagctggtggtgggggtttgggcggaggcagacctgccctgctccag
accccagtgagagagccagctagagacagcgtggcagggcggcttcaggccctcgccggc
ttcaccccccagacctcgagtcgctgggggccactcagaggggactttgatgagcgtgac
atgcggagctctccggccgcggtctccaagggcttccaggaagcgcgccctggctctaac
caagggcagaactttcccaaccgctttgagaaccagaaccgcgctggatcagtaggagcg
gtaggaggaggagtatgtactggtggtgttggagggggcccggcgtggagtcgtggtgga
gttgatgctgcagcacagttcactgatgctgacatgccccaggacttggatgagtgccgg
cgcccttgggacaggcagcaacgggacagggactttgacttcaggaaggagatgaatggc
aaccggcgtgagagagacagccgtgagaaggagagggagcgcgagagagaaagggaccgt
ggccgtgagcgtggaaaccgtgaacgagagcaggagcgtgaccgggagagagagcgtgaa
aaggagagggagaaggatcgggagagggaacgtgagagggaacgtaacaagcgtggagcc
tggacaccccttcttcctctaccacaacccctgctccctactcctaccctgaccccaacc
ctctccctcacccaaggcaaaccccaggccctgctgcaactacagtccaagcttcaacct
aaacctggactcctaactaaaccgggtctgcttcaaactccaactctcctaactcggtca
acatctcatgtcccaaccaagtctcttcttcaagccccatcccagtctcttcttcaagcc
ccatcccagtctcttcttcaagccccatcccagtctcttcttcaagccccatcccagtct
cttcttcaagccccatcccagtctcttattcaagctccatcccagtctccacctctaacc
tcatcccagtctctacctaaagctccaccccagtccacccagtttccaactcaagccaag
aatgaagctcgccccggtcctaagccccaggcagagttccattcctctccccagacacat
gtgtcccccaagtctgagtcctctcctcagaaccagtcaccaccccaaaaccaggcttcc
cttcaggcccagttgctgcaccctgcccattcctctttccagacaaagtcccctccccag
ggccagtcatcatcacgtgcacagtcaccaccccaggccttgtccctacagaccccccgc
accccagaggagatcactgacacccatggggagccagagaagccagggaaacctcaggaa
gaacctatgaaagaacctgaacccatggtagaacctccatctcggtgggtcaatggaaca
gggtcgaggatggacactgacgcagtggctgagcccaccactaccccgtcccccaatcct
gccctctcaatgtcactggtcctcacacacagccctgtggagccccaatgcctgccggag
cccctggaccagcagcatccctcgcagcatgtcgcctcttgctcctccacaaaggatgta
gacaatggactgagtgagccgatggaggaagctgagaaacagccagtggtagagaaaaca
gacactgaggggacaatcatcactcagtag
DBGET
integrated database retrieval system
