Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383828
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Entry
139383828 CDS
T10872
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139383828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139383828
03021 Transcription machinery [BR:
ocla03021
]
139383828
03036 Chromosome and associated proteins [BR:
ocla03036
]
139383828
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
ARID
139383828
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139383828
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139383828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
139383828
NCBI-ProteinID:
XP_070984505
LinkDB
All DBs
Position
25:complement(14245356..14470619)
Genome browser
AA seq
2323 aa
AA seq
DB search
MAAQVASAPTTTNNKKNKLSGSLGQEIHSGKSGGGTISRSGAMLGAGDGTNTMNNIDHHH
QNELNMVNSTSPNNNSDTREKESGNNITSSNSTTSLEGMETGLIANHKQNNVSGDPPLHL
TPPQQQSQFNPFPQHQQRQIQSNNINNSQATRGESENQHHGGKRGVLASQTEQQMLSKGE
GDHTCKPGERMGARYEHANLGPTTEISSQPQSAGGNSAISEFNNYYGTSRVGACYDQHGG
QNTGMGMMHSSGPNNMDPVHNSHEGYHNSQYNHYPGYRQGYGGAGYGMMAPSRQGSNMLI
GPGSNTPASHVKAAMGAASSGSGGSVGGFQRFPGHTQHPSGATPTLNQLLTSPSPMMRGY
GSGYHQDYNSPSAQQQAGIGLGKDMTSQYGSTTHGWPGQQRNHPSMSPGNGGQGISRPQV
ASVDFMAMKRSHLYGMGNNPYSQQQQGGPYPSQPYGSPATHRYPMGMQGRGQAGMGGMQY
PQQQVPPQYGQQGMGGYSQQQQGTPPGSYFSPPQQNPTAPTQPPYLPPRAPPQQEAPQES
YRGSTRSQQHVPGNSGKANLEDMGLIPQDRPSSLPDLSGAIDDLPTGTDAGHSSAVSATG
STSSQGEQSNPSQSPFSPHASPHLSGRGSGPSPSPVGSPVGSNQSRSGSGPISPVSGPTT
AQGSQMAPQIPVNMSDVPHSPLTQSPMPQERGFMSNMQRNQCGSQFATPPPQSGPSMSPH
PSPGPGPGGQMYPGMGPRPYLQGGSSGPYGPQGSQANQYGPQGNYPRPPNYGGTPSANYS
GPGPGMTNSLGMNASSPMHGQGPGQPMPMGRSLGAGSRPYPNMAPSSPSMPQPAGPGMGP
PSLGNVNRKAQEAAASVMQAAVNSVQSRQGSYPGPSINQIVPPINQSQGNNSGIGMPQGP
PYNMPPSGPMGMAGDGMVTPVGKQKMDGKEESMPTNEPPRPKDGYSGSQCVSQPTTPGAM
PVPSPLSPSPASLSSYHGDDSDSISSPVWPKTPSSPKPNSSTMTNEQITRLYDMGGEPER
RGWVDRYLSFMEERGTPVPHLPAVGKKPLDLYRLYMVVKEIGGLAMVNKNKKWRELSTSL
SVGTSSSSASSLKKQYIQYLFAYECKVERGEDQPADSNTGTGGDNRKQAKLQPPAPANSG
SLQGPQTPQSSGSSSMAEMSGDLKPPTPASTPQGQVTPIPASRNSVVSVQDPFSEVSDPV
FQKRNSLPPGGPGGPYQQGVNMPPDVMMRMQYEKDPFAGMRKVAGGDSYMPGQMPSGGMQ
EMYGRPPSGMGQRSQYPYGPGYDRRPDHVIGMEGSMGTPGSQSNMGPSNSEGSIYSPNRY
PSQLRHEGYGQQYPGMSYGMHPSGMYPQQQGYKRPMEGMYGPPGKRHEGEMYGPPGKRHE
GEMYGPPGKRHEGEMYGPPGKRHEGEMYAMQYGSQQPDMYNQYSTGYSGPERRPMQGQFP
YPSPYSRERMQASGQGQHPQQPMGPQMMAGGPPSNNGVEGPQGPNMWPSRTDMGYPYSNR
QGAPSQVPSYGPLGRGEDMEGRPIQDGQWLGHGGHRQSSYMSGGMTPMSSRQPPSAYQTS
PSMANHLPRAPSPGSFQRSMEARMSPNKAAYMGSMKMPCKPGMPMPGQGSGHPGQVPPNL
RRDLNYPLGSVEATMPLLKPRRKMTSKDTGTPEAWRVMMSLKSGLLGESTWALDTVNILL
YDDSTVASFTLAQLPGFLELIVEYFRRCVMEIFGILEEYEIGTIGQKTLLGPEACNHRDE
LTSEPEMDCEASQPEPESEQEVERGEVEKGEVENGEDKPADITEKITVELMSPPNATVPA
PEGTKEESEAEVKVKKEEGEKEQEGEKGKEEGEKPTESKKVPAESKEDYPNQSEPRPQQA
SKYDKFPIKILHKEDLIEDMTELAHVTEFTSGLLHWQVGGGDSTAHIQTHFEGRGEQPDR
TEGERDECAILNKEQETDSRTEEKGNRITATIDDILCARLEALSEGHPTHSAPTYPFRLH
QGGGHKHITLLEDEPRCLNEAPLSAASPWQDSLAKRCLCVSNILRSLSFIPGNDSDMSRH
PGLVLILGRLLLLHHQHPERKRTSPSYQREEVQERGLACSKDEWWWDCLTVLREDTLVTL
ANISGQLDLSLYPETICLPILDGLLHWMVCPSAEAQDPFPSAAPHSPLTPQRLVLECLCK
LSIQDNNVDLLLATPPFSRQEKLYATLVRYVGQRKNQVYREMAVATLSNLAQGDSTSARA
IAVQKSSVANLMGFLEDGVSMAQYQQNPHSLLHMAHHPPMEPPSVNMMCRAAKALLAMAK
VEENRPEFVLYEGRLLDISISSVLNPGVASIVCEVLFQFVKKL
NT seq
6972 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcagcaccgacgacaactaacaataagaaaaataaattgtct
ggcagtttggggcaagagatacattcggggaaatcgggaggaggaactatatcgagatct
ggagcaatgcttggagctggagatgggactaacacaatgaataatatagaccatcaccat
caaaacgagctcaacatggtcaattcaacttctccgaataacaattctgacacacgggag
aaggagagtggaaataacataacatcgtcaaattcgacgacctctctggagggaatggag
acgggtttgatagcaaaccataaacagaacaatgtgagtggagatccccctctgcacctc
acgccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcgccagata
caaagtaacaacatcaacaacagccaagcgactaggggggagagtgagaatcagcaccac
ggagggaagaggggtgttttggcgagccagacagagcagcagatgctgagtaaaggtgaa
ggggatcatacctgtaaaccaggggagcgaatgggtgccaggtatgaacatgccaacttg
ggaccaacgaccgaaatcagcagccagccccagagcgcaggagggaacagcgctatttca
gagtttaataactactatggcacttccagagtaggggcctgctatgatcaacatggcgga
caaaacactgggatggggatgatgcactcctcgggacccaacaacatggacccagtgcac
aactcccacgaaggataccacaacagccagtacaaccactaccctggctaccggcagggc
tacggtggagcgggctacggtatgatggccccgtccagacagggcagtaacatgctgatt
ggccctggcagcaacactccagctagccatgtcaaggctgctatgggagctgcttcctcc
ggttctggtggaagtgttgggggctttcagagattcccaggacatactcagcatccctcg
ggagccaccccaactctaaaccaactgctgacgtctccaagtccaatgatgcgaggttat
ggcagtggctatcatcaagactataacagtccctctgcacaacaacaagctggcatcggt
ttaggcaaagacatgacttctcagtatggctccacaacccatggctggccagggcaacag
agaaaccacccgtccatgagtcctggaaacggagggcaaggtatcagcagaccacaggtg
gcttccgtggacttcatggctatgaagcgctcccatctctacgggatgggcaacaacccc
tactctcagcagcagcagggcgggccctaccccagccagccatacggatcacccgctaca
cacagatacccaatgggaatgcaggggaggggccaggcgggcatgggcggcatgcagtac
cctcaacagcaggttcccccccagtacggccagcagggtatgggaggatacagccagcag
cagcagggaacacctccgggatcctacttcagccccccccagcagaaccccaccgccccc
acacagcccccctacctgcctccccgcgccccaccccagcaggaggctccgcaggagagc
tacagaggcagcaccaggagtcagcagcatgtcccagggaattctgggaaggccaacctt
gaggacatgggtctgatcccgcaggaccgcccctccagcctcccggacctgtctggtgcc
atagacgacctccctacagggacggacgctggtcacagttcagccgtcagtgctacaggc
tccaccagtagccagggggagcagagtaatccgtcccagtcacccttctcaccccacgca
tcaccccacctgtctggccgaggcagcggcccatcgccctctcctgttggctcccccgtg
ggctccaaccaatcacgctccggctctggcccaatctccccagttagcggcccaaccaca
gcacaagggtcccagatggccccccagatccccgtcaacatgtcggatgtccctcactcc
cccttgacgcagtcccccatgcctcaggagaggggctttatgtccaacatgcagagaaac
cagtgtggctcccagtttgcaacaccaccacctcagtcggggccttccatgtcccctcac
ccctctcctggtcctggtcctggaggacaaatgtacccagggatggggcccaggccctac
ctccagggtggctccagtggcccctacggaccccagggatcccaggcaaaccagtatgga
ccccaaggtaactacccacgtccacccaactacggtgggacccccagtgccaactacagc
ggtcccggccctggcatgaccaacagcctgggtatgaatgccagcagccccatgcacggc
cagggtcccgggcagcccatgcccatgggccgcagtcttggcgcgggcagccgaccctac
cccaacatggcccccagctcccccagtatgccccagccggcaggcccagggatgggccct
ccttcactgggcaacgtcaaccgcaaggcccaggaggcagccgcttccgttatgcaggcc
gcagtcaactctgtacagagcagacagggcagctacccaggccctagcataaaccagatt
gtgccccccatcaaccagtcacagggcaacaactcaggcattggcatgccacagggtccc
ccctacaatatgccaccctcagggcccatggggatggctggggatgggatggtgactcct
gttgggaagcagaaaatggatggcaaggaggagagcatgcccaccaatgaacctcccaga
cccaaggatggctacagtggatcccagtgtgtctcccagcccaccacccctggtgccatg
cctgtcccctctcccctgtcccccagcccagccagcctgtcctcctaccatggggatgac
agtgacagcatcagcagccccgtctggccaaagactccctccagccctaagcccaactcg
tccaccatgactaacgagcaaatcacacgtctgtatgatatgggtggggagccggagagg
cgtggctgggtggaccgctacctgtcctttatggaggagaggggtacacctgttccccac
ctccctgccgtgggcaagaagcccctggacctctacagactgtacatggtggtcaaggag
atagggggcctggccatggtgaacaagaacaagaagtggcgagagctgtccactagtctg
agtgttggtacctccagtagctccgccagctctctgaagaagcagtacatccagtacctg
tttgcctatgagtgtaaggtggagcggggagaggaccagccggccgacagcaacactggg
actgggggggacaacaggaagcaggccaagttgcagccgcccgctcctgctaactcaggg
tccctgcagggcccccagaccccccagtcgtcaggcagcagctccatggcagagatgtca
ggtgacctgaaaccccccaccccagcctcaaccccccagggccaggtcacccccatccca
gccagcagaaacagtgtggtcagtgtgcaggacccattctctgaggtgagcgacccggtc
ttccagaagcgtaactccctccctccggggggccctgggggaccgtaccagcagggggtc
aacatgccccctgacgtgatgatgaggatgcagtacgagaaggacccctttgctggcatg
aggaaggtggcaggaggggattcctacatgccaggccagatgcccagcggtggcatgcag
gagatgtatggcaggcctccatcaggcatgggccagcgttcccagtacccatacggacca
ggctacgacaggagaccagaccatgtgatagggatggaggggagcatgggcacccccggg
agccagagcaacatgggaccttccaacagcgagggcagcatatactctcccaacagatac
ccctcccagcttagacatgagggttacgggcagcagtaccctggcatgtcatatggaatg
cacccctcagggatgtacccacaacaacagggttacaagcgccccatggagggcatgtac
ggccccccaggcaagaggcacgagggggagatgtacggccccccaggcaagaggcacgag
ggggagatgtacggccccccaggcaagaggcacgagggggagatgtacggccccccaggc
aagaggcatgagggggagatgtatgccatgcagtacggcagccagcagcctgacatgtac
aaccagtacagcactggttattctggtcctgagaggaggcccatgcagggccagttccct
tacccctccccctacagccgagagcgcatgcaggcttctggccagggtcagcacccccag
caacccatgggtccccagatgatggccggggggccaccctccaacaacggagtagaagga
ccccaggggcccaacatgtggccctccaggacagacatgggttatccctactctaacaga
cagggggcaccctcccaggtaccgtcatacggtcctttggggagaggagaggatatggag
ggccgacccatccaagatggtcagtggctcgggcacggaggccatcgccagtcctcctac
atgtcaggtggtatgacacctatgtcctctcgccaacccccttctgcctaccagacctcc
ccctccatggccaaccacctgccccgagcacccagccccggctccttccagcgctccatg
gaggcacggatgtcccccaacaaagctgcctatatgggctccatgaagatgccatgcaaa
ccgggcatgcccatgccagggcagggtagtgggcacccaggccaggtcccacctaacctg
cggagagacctcaactaccctctaggatctgtagaggccaccatgccccttctcaagccc
cgccgcaaaatgacctcaaaggacactggaaccccagaggcgtggcgagtgatgatgtct
ctgaagtcaggtctgctgggtgagagtacgtgggccctggacaccgtcaacatcctgctg
tatgatgacagcactgtggcctccttcaccctcgcacagttgcctggcttcctggagctg
atagtggagtacttcagacgctgtgtgatggagatctttggcatcctggaggagtatgag
atagggaccatcggccagaagaccctcctggggcctgaagcctgtaaccatagagatgag
ctgacctctgaacctgagatggactgtgaggccagccaaccagagcctgagtctgaacag
gaggtggagaggggggaggtagagaagggggaagtagaaaatggggaggacaaacctgct
gacatcacagagaaaattacagtggaactgatgtcaccccccaatgcaacggtaccagcc
cctgagggaacgaaggaggaatctgaagccgaagtgaaggtaaagaaggaagagggggag
aaagaacaggagggagagaaagggaaagaagaaggagaaaagcccacagagagtaagaaa
gtcccagctgaaagtaaggaagactatcctaatcagtcagagccaaggccacaacaggcc
agcaagtacgacaagtttcccattaagatcctgcacaaagaggacctgattgaggacatg
acggagctggctcacgtgacagagttcactagtggactgctccactggcaggtaggcggg
ggggattccacggcccacatccagacccactttgagggcaggggagagcagcctgacagg
acggagggagagagagacgaatgtgctattctgaataaagaacaggagactgactcgagg
acagaggagaaagggaatcgtatcaccgccaccatcgatgacatactgtgtgcccggctc
gaagctctgtcagagggccaccccacccactctgcccccacctacccattcaggctgcac
cagggtgggggccacaagcacatcaccctgctggaggacgagccccgctgtttgaacgag
gctcccctctcagcagcttctccttggcaggactccctggccaagcgctgcctctgtgtg
tccaacatcctccgcagcctctccttcatccctgggaacgactcagacatgtcccgtcac
ccaggcctggtactgatcctgggcagactgctgctgctccaccaccagcacccagagagg
aagaggacgtcccctagctaccagagagaggaggtgcaggagcggggcctggcctgcagt
aaggatgagtggtggtgggactgtctcactgtactcagggaggacaccttggtcaccctg
gctaacatctctggccagctggacctttccctctacccagagaccatctgcctgcccatc
ctggatggcctactccactggatggtgtgtccctctgccgaggcccaggaccccttcccc
tcggccgccccccactcccccctaaccccccagagactggtgctggagtgcctgtgcaag
ctgagcatccaggacaacaacgtggacttgctgctggccacgccaccgttcagccgccag
gagaagctgtatgccaccttggtgcgctacgtgggtcagcgtaagaaccaggtttatcgc
gaaatggctgtggccaccctctccaacctggcacagggggactccacgtcggcacgcgcc
atcgcagtacagaaaagcagcgtggctaacctgatgggcttcctggaggatggggtgagc
atggcccagtaccaacagaacccccacagcctgctgcacatggcccaccacccccccatg
gagccccccagtgttaacatgatgtgtcgggctgcaaaggctctgctggctatggccaag
gtagaggagaacaggccagagtttgtcttgtatgagggcagactcctggacatctccatc
tcctctgtgctcaacccgggggtagccagcattgtatgtgaagtactctttcagtttgta
aaaaaattatga
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integrated database retrieval system
