Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139383830
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Entry
139383830 CDS
T10872
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139383830
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139383830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Rotamase_2
Motif
Other DBs
NCBI-GeneID:
139383830
NCBI-ProteinID:
XP_070984506
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All DBs
Position
25:complement(27230584..27246967)
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AA seq
1199 aa
AA seq
DB search
MTGAFEMTLYSCDCLHAEAINMALFPAFAGLSNTKAEIAPKELEWLNNQSFRTDDALSLH
QRATEKANETQSAETSRHVIPEREDKNDVQSNKKKKKEKKKKKKKHKKKSGEPSPASSGS
DSDTIYPSDLLKKAESTPPSEGVQFQVEGSFVWLDDLQTPTDQPFCVDRRADRANWEYKS
LYRGDIARYKRKGSSSLGLDLRSQAVSWAESGPEKKRVDRRQRPNRYFSPTVRQLLMSDG
KPTLPRPPPEDTTTTTLPFIPVPSCLEGEAEGGGSAKGQGSWVNPLGVYDSSTSLWLQGK
GKAEHGKAEEQPSTPRDNAAVMLAERVEDFNRRLRETPTDTHTWLQFVLFQDEVAGAPGV
FADISENESERRKRSVRATLEKKVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKE
WKKLVFLHPNSAPLWRKYLLFMQSHFSTFSVSKVNTVYGKCLSTLAAVQDGSMVSHQMLP
GTDEHMLAIFLQQCHFLRQAGHSEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFW
DSGEPRVGERGASGWRAWMTQQERGGWLQPSEQDDGDEEDQEELEVKDKTWPKWRIWLDV
ETSREAIHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLARPDLQLCLLLSFLHF
LGLPADTSCYSAPSCSLLLDDQALLGDVHHPDSPLTSYALPVPGVSPVGHMTSLQGARRG
VGLCKQGEEFVDNVFQMVLPLFSAQERAVLSLHWIQYEKLKVLRCVRGRNKKRVKSQGKR
SKRLAKRLLKEPENRGRLSLWREYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCD
LCLLYAQLEVEEAWRRDTGGAGTTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLK
ARKAYEQAVVSSLPGQEEGAAGQGQSKKSRQVKGLVGCYALFQYLTVGVDAADAVYNLAR
KRLEQHSSMSAQESASSEVMCDIQTLSSVSECEALAVQQVALLRYHTSTNVYPLSHIRLA
LTSALAHFASSTSLWQLYVQVENRYHSAGRARRFFHSVTKASASVVPRLFAISAEQQRKQ
LVDSVQRSDCYGDTLSSLPENGLSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKV
EKGRGIFYKALQDVPWAKGLYMDAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcgcgttcgagatgacgttatattcatgcgactgtttacacgcagaggctatc
aacatggcactatttccagcttttgcaggattatcaaatacaaaagctgagattgcacct
aaagaactagaatggctgaacaatcaaagtttccgcactgatgacgctctctctcttcac
caacgagccactgagaaagccaacgaaacacaatcggcagaaacaagcagacacgttata
ccagagagggaggataagaatgatgtccaatccaacaagaagaaaaagaaggagaagaag
aagaaaaagaagaagcacaagaagaagagtggagaaccctctccagcaagcagtggctca
gattcggatactatctaccccagtgacctcctaaaaaaggctgagagcactcctcccagt
gagggggttcagtttcaggtggaggggtcttttgtgtggttggatgacctccagaccccc
accgatcagcccttctgcgtggacaggagagcagaccgtgccaactgggagtacaaatca
ctttacagaggagatatcgctaggtacaaaaggaaaggctcttcctctctgggtttggac
ctgcggtctcaggccgtgagctgggctgagtctggcccagagaagaagagagtggacagg
agacagagacccaaccgctacttctcccccaccgtccgccagctgctgatgtctgatggc
aaacccacgctgcccagacctccaccagaggacaccacaaccaccaccttacccttcatc
cctgtgccctcctgtctggaaggtgaggcagaggggggtggctctgccaaaggccagggc
tcctgggtcaaccccctgggggtgtatgactcctccacgtccctgtggctccaggggaag
gggaaggcggagcatggcaaggcagaggaacaaccttctactcccagggacaatgctgcc
gtcatgctggctgaacgggtggaggacttcaataggaggctgagggaaacccccacagac
acacacacctggcttcagtttgtcctcttccaggacgaggtagctggggcgcctggggtg
tttgctgacatctctgagaatgagagcgagcggcggaagaggtcagtgcgggccacgctg
gagaagaaggtagccattttggatcgagcagtggagaataacccgagctgcgtggaactg
aagctggagcgactgcggctctgtagggagctgtgggagccggcagccctgctgaaggag
tggaaaaagctggtgttcctgcaccccaacagcgcccccctgtggaggaagtacctgctg
ttcatgcagagccacttcagtaccttctccgtgtcaaaggtcaacacggtatacgggaag
tgtctgagcacgctggcggcggtgcaggatgggagcatggtttctcaccagatgctgccg
ggcactgatgaacacatgctggccatcttcctccagcagtgtcatttcctcaggcaggct
ggccactcagagaaagctgtgtgtctgttccagggcctactggacttcaccttcttcaag
ccagacactgtcaaggacctacccaccagacaacaggtggagttctttgagccattctgg
gacagtggggagccccgtgtcggggagagaggggccagtggatggagagcctggatgacc
cagcaggagagagggggctggctccaacccagtgaacaagatgatggagatgaagaagat
caggaggaactggaggtgaaggataaaacctggcccaagtggaggatctggttggatgtg
gagacgtcacgcgaggccatccattggctgccatggaggccggacaaaaccaagggccaa
tcggtggaggactgtgaggacccggaccgacaggtgctgtttgatgacattgggccgtct
atgatccgactggcccgcccagacctccagctatgtcttcttctgtccttcctgcacttc
ctgggtctgcctgctgacacttcctgttacagcgccccctcctgtagcctgctgctggat
gatcaggctctactgggggatgttcaccaccctgactcaccactgacctcttatgccctc
cctgttcctggggtcagccccgtgggtcacatgacctccctgcagggtgccaggaggggg
gtggggctgtgtaagcagggggaggagtttgtagacaacgtgttccagatggttctgcct
ctgttctctgctcaggaaagagctgtcctctcactacactggatccagtatgagaaactc
aaggtgctgaggtgcgtgcgcggcaggaacaagaagcgtgtgaaatcccaggggaagagg
agcaagcgcctggccaagcgcctgctgaaggagccagagaaccggggacgcctcagcctg
tggagggagtacgcccacctggagtggctgctagggaatttggacgaggcccacaaggtg
ttcgacacagccctgggactgggtgtggcaggagggctggcagaccctgccctgtgtgac
ctctgcctgctctacgcccagctggaggtggaggaggcctggcgaagggatacgggcggg
gcagggacgactgttacgaccgccatgtcttcaccagcggtctatatcctcaccaagcta
gcagagggtagttcgtatgcccccttcttgggacagttggctccagtggccgtgctgaag
gccaggaaggcctatgagcaggctgtggtgagctccctgcctgggcaggaggagggggcc
gcggggcaggggcaatccaagaagtccaggcaggtcaaaggtctggtggggtgttacgcc
ctattccagtacctgactgtgggggttgatgctgctgatgctgtctacaacctggccaga
aagaggctggagcaacactccagtatgtcagcccaggagtcagctagcagtgaagtaatg
tgtgacatacagacactgagctctgtctcagagtgtgaggccctggctgtccagcaggtg
gcgctgctgcgctaccacaccagcaccaacgtgtacccacttagccatatcagactggcg
ctgacctcggccctggcccactttgcctccagcacttctctgtggcagttgtatgtgcag
gtggagaaccgctaccatagcgctggcagggctcgccgcttcttccacagcgtgaccaag
gctagtgccagtgtcgtgccacgcctgttcgccatcagcgcagagcagcaaaggaagcag
ctagtggactctgttcagaggtctgattgctatggtgacaccctctccagcctgccagag
aacggcctgagcaaccgtatccgctcgctgtttgagaatgccatagcaacagagcacggg
gtccactgtccgttgctgtggaggatgtacatgaacttcctggtgtcagaggggaaggtg
gagaagggaagaggtatcttctacaaggctctacaggacgtcccatgggcaaagggttta
tacatggacgcggtgcaactcttccctgagcacgtgcaggagttcctggacctgatgacc
gagaaggagctcagactgagggttcccatggaggaggtggacatactgctggaggactga
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