Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384048
Help
Entry
139384048 CDS
T10872
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
ocla03083
Polycomb repressive complex
ocla04110
Cell cycle
ocla04330
Notch signaling pathway
ocla04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139384048
03083 Polycomb repressive complex
139384048
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
139384048
04350 TGF-beta signaling pathway
139384048
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
139384048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139384048
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
139384048
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
139384048
HDAC complexes
Sin3A-HDAC complex
139384048
BRAF-HDAC complex
139384048
REST complex
139384048
SHIP complex
139384048
MiDAC complex
139384048
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
139384048
Heterochromatin formation proteins
Other heterochromatin formation proteins
139384048
Chromatin remodeling factors
NuRD complex
139384048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
139384048
NCBI-ProteinID:
XP_070984783
LinkDB
All DBs
Position
25:complement(15711089..15722884)
Genome browser
AA seq
497 aa
AA seq
DB search
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSAIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEGEEKKAGDEKKADEKKEVKEEKVPDE
EKMDTSTKGPKEESKTP
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagttctcaaggaacaaagaaaaaagtttgctactattatgatggtgatgtt
gggaattactactatggccagggccaccccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
aatggcgaggagatgaccaagtaccacagtgacgactacatcaagtttctgcgttccatt
cggccagacaacatgtcagagtacagcaaacagatgcagagatttaacgttggagaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgccattaactgggccggaggcctc
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attctggagttactgaaataccaccagagagtcctgtacatagacattgatatccaccat
ggagatggagtggaggaggcgttttacaccacagacagggtcatgaccgtgtccttccac
aagtatggagagtacttccccggcaccggagacctgagggatattggcgccgggaagggc
aagtactatgctgtgaattaccctctgagagatggtatagacgacgagtcttacgaagcc
atattcaaacctatcatggctaaggtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagccgactccctctcaggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtacatgaagagcttcaacctgcccctgctgatgctgggt
ggtggaggctacaccatccggaacgtggcccgctgctggacctatgagacagccgtggcc
ctggacagcgccatacccaatgagcttccatacaatgattactttgagtactttgggccg
gacttcaaactgcacatcagcccctctaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcgtctgtttgagaacctgcgcatgctgccccatgccccgggtgtt
cagatgcaggccatcccagaagatgctgtgcaggaggacagtggagacgaggaggaggaa
gaccctaacaaacgcatctccatccgtgcccacgataagaggatagcatgtgacgaggag
ttctccgactctgaggacgaggctgagggtcaagggggcggacgcagaaatgcagccagc
ttcaagaaggccaagaggaccaagactgaggaagacaaagagggtgaggagaagaaagca
ggtgacgaaaagaaagctgatgagaagaaagaagttaaagaagaaaaggtgccagatgag
gagaaaatggacacctccacaaaggggccaaaagaggagtccaagacaccgtga
DBGET
integrated database retrieval system
