KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384354
Entry
139384354         CDS       T10872                                 
Name
(RefSeq) WD repeat-containing protein 43
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    139384354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ocla03009]
    139384354
Ribosome biogenesis [BR:ocla03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    139384354
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_THOC3 Utp12 WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_Gbeta WDR55 DSE1_N Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR90_beta-prop_4th Beta-prop_SPT8 EIF3I Beta-prop_Aladin Beta-prop_WDR41 ASA1 Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 WD40_2 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_ACSF4 Beta-prop_HPS5 NBCH_WD40 Tricorn_2nd Beta-prop_IP5PC_F Beta-prop_SCAP SGL MinC_C
Other DBs
NCBI-GeneID: 139384354
NCBI-ProteinID: XP_070985162
LinkDB
Position
26:3144257..3173204
AA seq 636 aa
MAADGGSFSLGLPCVFSPKSRQYLALCAQDGRLRIWNTDIKTLNQEYVPSAHLSATCTCI
SWGPCRKAKEGPQRKKRKSEAGQVENQVDLLALGTAAGSVIIYSTVKGALHCTLDASHSG
VVNCVQWHPEDCLLYSGSDDTHIVEWDLQTGKARCKWKADRAPVTSLCVSPDGKLLLSAG
HTIKMWDLETKEVYRKFTGHSTAVTTLRFATTRPPDSNGLYFLSGAAHDRLLSVWQVRED
GKDKNSVVSFNLTDEPHHIDLFTSNSKEEALRLAVVCKDGQLHLFEHFLNGPCKKPLSPL
CTVQMTGVEDSPIPVPLLAVALTTDTHSLLLAYGNHLQPVMERVEVNTAERHVCLTRDVH
TTLSLTMETTVSKVKTPVVNAKSKVVVPGLPGHQAPVKGALGSEKRKGTDAKEMSIEERL
GKIEMSSEKGVKGAPSLQTDNFAVLLVQGLESKDANILNKVFQTRKDMLIKKTVARVPLP
AVLPLVEEITKRMQGHPYTAVLMVRWLKAVLMQHTSYLASLPDLVFQLGVLYHMIESRVK
MFHRLTKLHGKLYLLMTQVATSGNEVKDVDHTAKLVYEEESSDEDNASGDEGLPDEDSDN
WEEDETMEDKAEEGMRMESKVTADSDIEPGNESEEE
NT seq 1911 nt   +upstreamnt  +downstreamnt
atggcggctgatggaggtagtttttctttggggctaccctgtgttttctctccaaagtca
cgtcaataccttgctttatgtgctcaggatggcagacttcgtatttggaacacagatatt
aaaacacttaatcaagaatacgtgccttcagcacacttgagtgccacttgtacctgcata
tcttggggaccatgccgaaaggccaaggagggacctcaacggaagaagaggaaatcagag
gcaggacaggtggaaaatcaggtggacctgttggctctgggcacggctgcgggcagcgtt
atcatctacagcacagtgaaaggagcactgcactgtacactggacgcaagtcacagtggt
gtggtgaactgtgtgcagtggcaccctgaggactgcctgctgtacagtggctcagacgac
acacacatcgtagagtgggacctacagacgggcaaggcgcgctgtaagtggaaggctgat
cgtgccccagtgaccagtctgtgtgtgagtccggatggcaagctgctgctctcagcggga
cataccatcaagatgtgggacctcgagaccaaggaggtgtaccggaagttcacaggtcac
tccacagcggtgacgaccctgcgcttcgccaccacacgccccccggatagtaacggcctc
tacttcctctccggcgcagcccacgacagactcctcagcgtgtggcaagtccgggaggac
ggcaaggacaagaactcagtggtgtccttcaacctgactgacgagcctcaccacatagac
ctcttcacctccaacagcaaggaagaggcgttgaggctagcagtggtgtgtaaagacggc
cagcttcatctctttgagcattttttgaacgggccctgtaagaagcccctgtccccgttg
tgtacagtgcagatgactggggtggaggacagccccattcccgttcccctgttggctgtg
gccctcactacagacacacacagcttgctgctggcctacggcaaccacttgcagcctgtc
atggagagagtggaggtgaacacggcagagagacatgtttgcctgacccgtgatgtccac
accaccctctcccttaccatggaaaccacagtctccaaggtgaaaaccccagtagttaat
gccaagagcaaagttgtcgtccctgggcttcccggtcaccaagcgccggttaaaggagcc
ctgggatccgagaagagaaagggcacagatgccaaagagatgtctatagaggagcgactg
ggcaagattgagatgtcatctgaaaagggtgtcaagggggccccttctctgcagaccgac
aactttgcggtgctgctggtgcagggcctggagagcaaggacgccaacatcctcaataaa
gtgtttcagacccggaaggacatgttgataaagaaaacagttgcacgggtacccctccct
gccgtcttgccattggtggaggagatcaccaagagaatgcaagggcatccatacacggca
gtgctgatggtgcgatggctcaaggctgttctcatgcagcacacctcctacttagcctct
ttgccagacctggtgtttcagctgggagtattgtaccacatgattgagagtagagtcaag
atgttccacaggctgaccaagctgcacggcaagctctatctgctcatgacacaggtggcg
acaagcggcaacgaagtcaaagacgtggaccacacggccaagcttgtctatgaagaggag
tcctctgatgaagacaatgcttcaggtgacgaaggtcttccagatgaggattctgataac
tgggaggaggatgagactatggaagacaaggcagaggaaggcatgaggatggaatcaaaa
gtgactgccgattccgacatagaaccggggaacgagagcgaggaggagtga

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