Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384387
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Entry
139384387 CDS
T10872
Name
(RefSeq) interferon regulatory factor 8-like isoform X1
KO
K10155
interferon regulatory factor 8
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139384387
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
139384387
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Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
DSPc
Tc-R-P
Y_phosphatase
PTPlike_phytase
PTP-SAK
PTP-NADK
MH2
Motif
Other DBs
NCBI-GeneID:
139384387
NCBI-ProteinID:
XP_070985235
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Position
26:complement(20290406..20347226)
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AA seq
590 aa
AA seq
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MGNGMNKVVDGLYLGNIRDSENRESLSQNNITHILSVYNNAKPVLEDMTYLCIHAADASS
QNLSQHFKESIRFIHECRLNGGACLVHCLAGVSRSTTMVVAYLMTVTTYSWEECLSAVKA
VRSFVGPNYGFQQQLQEYQMNQVTEMSVNPGGRRLKQWLVEQIQSGQYPGLVWEDDSRIM
FRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEGEKAEPATWKTRLRCALNKSPDFEEV
GDRSQLDISEPYKVYRIVPEEEQKTGKSAAAALTSSPGDSTDMECSSAHLEELIKEVKQS
SSDEYLGIIKRSHSPQEDGCRMQPSPEYWSQGSVSVFPGHQDPSPMGSFNAAFSQMIINF
FYGGKLMDSVVTSHADGCRISPGQPPLVQHRSPYGLPDSLQNVCFPPAELIEVERQRHVT
RKLLGHLERGVLVRANREGIFIKRLCQSRVFWSGLGGLGPHYSPGGPCKLERDDVVKIFD
TGRFFQALQLYQEGQIPAPDPMVTLCFGEELHDLSTAKTKLIIVQVTPVNCQQLLDAVSM
RRSQYSSPNLEIQSDELHAGEQMARIYQDLCSYTAPQRAACYRDNMPITA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggggaatggaatgaacaaggttgttgatgggctctacctgggaaatatcagagactct
gagaacagagaaagtttgtcccagaacaacatcacccacatcctgtctgtgtataacaat
gctaaacccgtgctggaggacatgacctacctgtgtatacacgcagctgacgcgtctagc
cagaacctgtcacagcatttcaaagagagcatcaggttcatccacgaatgtcgtctaaat
ggaggggcctgtctggtgcactgtctggccggtgtgtcccgtagtactaccatggtggtg
gcctacctgatgaccgtcaccacctacagctgggaggagtgtctgtcggctgtcaaggcc
gtgcgttccttcgtaggcccgaactatggcttccaacagcaactacaggagtaccagatg
aaccaagtcacagagatgtcagtaaacccgggcggtcggaggctgaaacagtggctagtt
gagcagatccagagcggccagtacccggggctggtctgggaggacgacagccgcattatg
ttccgtatcccctggaaacatgctgggaagcaggattacaaccaggaggtagacgcttct
atcttcaaggcctgggcggtgtttaaggggaagtttaaggagggggagaaggctgagcct
gctacatggaagaccaggctgcggtgtgccctcaataagagccccgacttcgaggaggtg
ggagacaggtcccagctggacatctctgagccctacaaggtgtaccgcattgtccccgag
gaggagcagaagacaggtaaaagtgcagcagcagctttgacatctagccctggtgacagt
actgacatggagtgcagctctgcacacctggaggagctcatcaaagaggtgaagcagtct
tctagtgatgagtaccttggcatcatcaagaggagccactctccccaggaggatggctgt
aggatgcagcccagtccagagtactggtcccagggcagtgtcagtgtcttcccggggcat
caagatccctcgccgatgggttctttcaatgccgccttctcccagatgatcattaacttc
ttctatggtgggaagctgatggacagcgtggtaacatctcatgctgatggctgtcgtatc
tctccgggtcagcctcccttggtccagcacaggtccccctacggtctcccagacagcctg
cagaacgtatgtttccctcccgctgaactcatcgaggttgagcgccaacgccatgtcacc
cgcaagctcctgggccacctggagaggggtgtgctggtccgtgccaaccgcgagggcatc
ttcatcaagaggctgtgccagagccgtgtgttctggagcgggctggggggattgggcccc
cactacagccctggggggccctgcaaactggagagagatgatgtggtcaagatttttgac
accggaaggttcttccaagctctccagctgtaccaggagggccagattcccgcccctgac
cccatggtgaccctgtgtttcggggaggagcttcatgacctcagcacagccaagaccaaa
cttatcattgtccaggtcactccagtgaactgccagcagctgttggatgcagtgagcatg
cgtcgttcccagtacagcagtcctaacctggagatccagtcagacgagctgcatgccggg
gagcagatggcccggatctaccaggacctgtgtagctacaccgccccccagagggcagcc
tgctacagggacaacatgcccatcaccgcctga
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