Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384475
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Entry
139384475 CDS
T10872
Name
(RefSeq) C-myc promoter-binding protein-like
KO
K20163
DENN domain-containing protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139384475
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
139384475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
DUF2464
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
139384475
NCBI-ProteinID:
XP_070985361
LinkDB
All DBs
Position
26:42253231..42386927
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AA seq
2038 aa
AA seq
DB search
MEDKGPRVADYFVLAGLTDSSTPLEQEIHFHDVCHKTAKPKPPITDVAVVMRSLGEEVPP
GYTCVESTPSGLSADLNNGSLMAPQIFLCYRRGRDKPPLTDLGVLYEWKERLKQGCHIIQ
TTPSGRPANISSTSSQRIYVTYRRATESQTYAALAVTDICVIIPGKGETPPHTFCKVDKN
LNSSMWGSSVYLCYKKSVAKPNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATIE
AWPAQTKYPLPVFSTFVLTGSSGEKVYGAAIQFYEPYSQDCLTDQQRSQLGLPGLDHGPC
SPASSPATSPCTPAPGPRALHTNKCICLLSHWPFFDAFRKFLTFLYRYCISGPHTLPIEK
HISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSILLQNLGPENAIT
LLVFAVTEHKILVHSLRPAVLTSVTEALVAMIFPFHWPCPYIPLCPLALAGVLSAPCPFI
VGVDSRYFDLYDPPLDVSCVDLDTNTISHNGDKRALTWKILPKKACKNLMNVLNNLYQQL
VDGQQRPDGLLELSMSDCTELACGKSLHSLEMEIQEAFLRFMAAILKGYRSYLRPITQAP
SEKTTDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDC
VDKLYSADKGGKVDSDKPDETRLIEIDESQRSEHTVFITPPELPHLPDGEEHPLCYSYAG
FPVLSLDLFDPMEGLRPPASRLAARQSCPTSPAPMFRRTKQEIKLSQKLAKKYSSIPQMW
SKCLLCHCYGLWFICLPSYVKVCHSKVRALRTAYDVLRKMQDKKLQPPDEVCYRVLMQLC
GQYGQPVLAVRVLFEMKKAGVQPNAITYGYYNKAVLESTWPSSTRGGYFMWMKLRNVVMG
VAQFRQALRKQQPPPTQSPLSDGSDLDAVSHGSLDSSADTNTAEQGPYAPDSIKVDPTDD
RRSTVSRGDWGGVGSDTRSGHSHWGGSDLHSPHHSGEQSDLGYNSLSKEEVRRGEPSPLD
RDSTQDKDNKKESDCSSLLETESAKSSGDCLPQQDFPEVNGPFKRHNSGIVRGNCPYDDV
ACEPKRSTSTDHVAGLLLSSSLNEVGVVETNSLRRRHLSALEEGGVSGSSGGGGGGGGGG
GHDWQGVRGCRLSGDNRVGSGSSGTPVLGLGLHQGETDPARIAENLGADTKILQGTSFSQ
TNRPRSLVLGGSEGVGAAGGRTRRCRRRDSPEDGEERDWSDEDKNDKNNTDAIFDLEDLD
LDGPTTESVAKTSQSRKRTVERSASYGGVGVASASRGTVKRTGIETGFDPLSLLAAESKS
QGDREDDLEVEMDGVATPTGRRQDHLAREIEMYMNHMGSPLNSRTPSMDLQDPSSPLFLH
PPPPLITTPRRASLPHTSPLRTGGLPRSRTHNSPSPSQPARQRLWSSPPCPRSTPSPQPS
PYRERERDRDLGLLSPSLSSSSFALDQLLTPTLDVFKSSVFSAGKGVAEKASRWYSRLAT
SYTVPTKDGNCDRLSVSSLGMDPDCSSLLDVDEEGLGDPDGSITSPQRNGPGPRRSPRRS
PSRRSPLRSRLDSSTHRQTGFPPPDCSDLGSSRYTSNTSVFQNYAMELLISSCSRCKTCD
GLVYDEEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDLRGPGRFYLKSSPSADEAVS
SSYSVSTGLDTGTSTLSTPCPTTVLSPLSPRITVEGCSGNNRLSSSRAQCIEIPTERRQG
ALSPGSAMVRSVSAFDPMEEPTRLSHNVPTSGSLPSRLNEASDPLSVDMEWRLHHPEPVT
VPYLSPLVLWKELESLLENEGDPVITVSAVVDHHPIIYWNLVWSFRRLDLPSNLPGLILT
SEHCNRGSTVPRHWMSEDSKHVLIQILWDNLKLHRDLIQPFYILWNTQRLNCALLLDSVG
YPLCRPVSEAERPFGEELLHSVVKSIQRNDVSRPMGQLLQLLGQSLGVKRQRSLYRDILF
LCLVALGKDNIDIDAFDREYKMAYDHLSPNLVKLTHNCDRPPSAGVMECRKTFGEPYL
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaggggcctcgtgtagcagactacttcgtgctggctggtctgaccgactcc
tccactccactggagcaggagatccacttccacgatgtctgccacaagacggccaaaccc
aagccgcccatcaccgacgtcgctgtggtgatgcgctcgctgggggaagaggtgcctcct
gggtacacgtgcgtggaatccacgccgtccggcctgtcagctgacctgaacaacggaagt
ctcatggcgccacagatcttcctgtgttacagacgaggacgagacaaaccaccactcact
gacctgggtgttctgtatgagtggaaggagcggttgaagcagggttgccacatcatccag
accacgccctccggacgccctgccaacataagctccacctcctcacagaggatctacgtg
acgtatcgccgcgccacggagagccagacctacgccgccctggccgtcacagacatctgt
gtcatcatccccggcaagggagagacgccaccacacaccttctgcaaggtggacaagaac
ctcaacagcagtatgtggggttcctctgtctatctgtgttacaagaagtctgtggccaaa
cccaacaccatagcctacaaggcaggtctgtttagcaggtatcctgaggaggactatgag
tctttccccctgcctgagtccgtgcctctgttctgtctgcccatgggggccaccatcgag
gcctggccggcccagaccaaataccccctgcctgtcttctccaccttcgtactgaccgga
tcctctggagagaaggtgtacggtgcagccatccagttctacgagccctactcccaggac
tgtctgaccgaccagcagcgctctcagctgggtctaccggggctggaccacgggccctgt
tccccagcctcatccccagccacctccccctgcaccccagctccgggccccagagcgcta
cacaccaacaagtgtatctgtttgctgtctcactggcccttcttcgacgccttccgcaag
ttcctcaccttcctctatcgatactgcatctctggacctcacaccctgcccatcgagaag
cacatctcccacttcatgcacaaggtccccttcccctcctctcagaggcccaggatactg
gtgcagctctctcctcacgacagcctgatgttgagccagcctgtgtcatcccctctacca
ctcagtggtggtcggttctccatactgctgcagaacctcggtccggagaatgctataacg
ctcctggtgtttgctgtgacagaacataagatcctggtccactctctacggcccgctgtt
ctgaccagtgtcactgaggctctggtggctatgatcttcccattccactggccgtgtcca
tacatccctctgtgcccgctggctctggcaggagtcctctccgccccctgccccttcatt
gtgggtgtcgactcacgctactttgacctttacgacccccctctggacgtcagctgtgtc
gacctcgacacgaacaccatctcccacaacggagataagagggccctgacctggaagatc
ctgccaaagaaagcctgtaaaaacctgatgaatgtgctgaacaatctctaccagcaactg
gtggacggtcagcagcgtcctgatggcctattggagctgagtatgagtgactgtacagag
ctggcctgtgggaagagcctccacagcctggaaatggagatacaggaagccttcctcagg
ttcatggcggccatcttgaaaggctaccgctcatacctgagacccatcacccaggccccg
tctgagaagactactgacgcctcctctctctttgacttgcaagggttcctgaagagcaga
gaccggtcccaccagaagttctactccctgatgaccaagactcagatgttcatcagattc
atagaggagtgctccttcgtctcagacaaagacgccagcttggccttcttcgatgactgt
gtggacaagctctacagtgcagacaaaggaggcaaggtggacagcgataaaccagatgag
accaggctgatagagattgacgaatcacagcgcagcgaacacacagtcttcatcacaccc
cctgaactaccccatctgcctgatggagaggagcacccactctgctacagctatgcaggt
ttcccggtgttgagtcttgatctgtttgaccccatggaaggcctccgaccccctgcctct
cggctggctgcccgacagagctgcccaactagccctgcacccatgttcagacgcaccaaa
caggagatcaagttgtctcagaagttagccaagaagtactcttccatccctcagatgtgg
tccaagtgtctgctgtgccactgctacggcctgtggttcatctgtctgccgtcctacgtc
aaggtgtgccactccaaggtgcgggcgctgcgcaccgcctacgacgtcctcaggaagatg
caggacaagaaactacagcctcccgacgaggtctgttacagggtcttgatgcagctgtgt
ggtcagtacggccagccagtcctggcggtcagagttctgtttgagatgaagaaggctgga
gtccaacctaacgccatcacctacggctactacaacaaggcggtgttagagtctacctgg
ccctccagtaccagaggaggttacttcatgtggatgaagctgaggaacgtggttatgggt
gtggctcagttcagacaggcgctacgcaaacagcagcctccacccactcagagccctctg
tcagatggcagcgacctggacgctgtgagtcacggcagcctggatagctctgccgacacg
aacacggccgagcagggcccctacgcccctgactccatcaaagtagaccccactgacgat
aggcgtagcacagtcagccgcggggactggggcggtgtggggtcggacacccggtcgggt
cactcacactgggggggttctgacctccactccccccaccactcaggtgagcagtcagac
ctggggtataactccctctctaaagaagaggtacgtagaggagagcccagcccgctggac
agggacagcacccaggacaaggacaacaagaaggagagtgactgcagctccttgttggag
acagagagtgctaagagcagtggagactgtctccctcaacaggacttcccagaggtcaac
ggtccattcaagcggcataattccggcatcgtccgcggcaactgtccctatgacgatgta
gcctgtgagcccaagaggtcaaccagcacagaccatgtagcaggtctcctgttgagctcc
tctctgaatgaggtaggtgtggttgagaccaacagtctgaggaggagacatctcagtgcc
cttgaggagggaggtgtcagtgggagtagtggaggaggaggaggaggaggaggaggagga
ggccatgactggcagggtgtgcgagggtgcagactgagtggagacaacagggttggcagt
ggtagcagtggcactccagtgttgggtctgggactgcaccagggagagactgacccagcc
aggatagcagagaacctgggggcagacaccaagatcctccaggggaccagcttcagccag
accaacaggccgcggtcgttagtcctgggagggtcagagggggttggagcagccggggga
agaaccaggcgctgcagacgtagagacagccctgaagacggagaggagagggactggagc
gacgaggacaagaatgacaagaataatacagacgccatctttgatctggaggacctagat
ctggacggaccaaccacagagagcgttgctaaaaccagccaatcacggaagaggacggtg
gaacgcagcgccagctatggcggtgtgggtgtggcctcagcctcgcggggcaccgttaaa
cgaacggggatcgagacaggcttcgacccgctgtccctcctggcggccgagtccaagtcc
cagggagacagagaggacgacctggaagtggagatggatggggtcgcgacccctacgggc
cggcgccaggaccacctggctagggagatagagatgtacatgaaccatatgggttctccg
ctgaacagccggacacccagtatggacctccaggacccctcaagccccctgttcctccac
cctcctcccccacttatcaccacccctcgacgggccagtctcccccatacctcccctctc
aggacaggaggattacctcgctccaggacccacaactccccctcgccctcccagcctgcc
agacagaggctctggtcctcacccccctgtccccgctccacccccagcccacagcccagc
ccctaccgggagagggagagagacagggacctgggtttgctgtccccgtctctgtcttcc
tcctccttcgccctggaccagctcctcacccccaccctggatgtgtttaagagcagcgtg
ttctcggcagggaaaggtgtggcagagaaggctagccggtggtactctcgcctggccacc
tcctacaccgtgcccaccaaggatggtaactgtgaccgtctgagtgtgtcctctctgggc
atggaccctgactgctcctccctgttggatgtggatgaggagggcctgggggacccagac
ggctccatcacctcccctcagagaaatggccccgggccccgtaggagcccaaggagaagc
ccatccagacgcagtcccctgaggagcagactggacagttccacacacagacagacaggc
tttcctcccccagactgctctgatctgggctcgtctcgctacaccagcaataccagtgtc
ttccagaactacgccatggagctgttgatctccagctgttctcgctgtaagacgtgtgac
ggtctggtgtacgacgaggagatcatggcaggatggacggctgacgactccaacctcaac
accacctgtcccttctgtgggaaccccttcctccccttccttaatgtagagatcagagac
ctgagaggacccgggaggttctacctgaagagcagtccgtcagcggatgaggctgtgtca
tcgtcctactctgtgtccaccggtctggacaccgggacgtccactctgtccactccctgt
cccactactgtcctgtctcctctctcacccaggatcactgtagagggctgctctggtaac
aacaggctgtcgtcgtccagggcccagtgtatagagatccctacagagcggcgtcagggg
gccctgtccccggggtcagctatggtgcggagtgtcagtgcctttgaccccatggaggaa
ccaactcgactcagccacaatgtacccacttcaggcagcctgcccagccgactcaacgaa
gccagcgaccccctgagtgttgatatggagtggcgtctccaccacccagaaccagtcaca
gtaccctacctgagtcccctggtgctgtggaaggagctggagtccctgctggagaacgag
ggagaccctgttatcacagtgtcagccgtggtggaccaccatcctatcatctactggaac
ctggtttggtccttcagacgtctggacctgcccagcaacctgcctggactcatactgacc
tcagagcactgtaacaggggatctacggtccctcgccactggatgtcagaggacagtaaa
cacgtgttgatccagatcttatgggacaacctcaagctgcaccgggatctcatccagccg
ttctacatcctgtggaacacacagaggcttaattgtgctctgttgttagacagtgtgggc
tacccgttgtgtcgtcctgtgagcgaggcggagcgtccgtttggggaggagctactccac
agcgtggtcaagagcatccagaggaacgacgtctctcgaccaatgggacagctcctacag
ctgctggggcagagcctgggggtcaagaggcaaaggagtctgtacagagacatcctcttc
ctgtgtctggtggctctgggaaaggacaacattgacattgatgcttttgaccgcgaatac
aagatggcgtacgaccacctcagccccaacctggtgaagctgacgcacaactgcgaccgt
ccgcccagcgctggggtcatggagtgtcgcaagaccttcggagagccctacctctaa
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