Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384940
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Entry
139384940 CDS
T10872
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139384940
03036 Chromosome and associated proteins [BR:
ocla03036
]
139384940
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
139384940
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139384940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
Zf-C2H2_ZNF451
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
Stm1_N
zf-C2H2_6
zf-C2HE
zf-C2H2_15
DUF8106
Zn_ribbon_DUF2089
Motif
Other DBs
NCBI-GeneID:
139384940
NCBI-ProteinID:
XP_070985956
LinkDB
All DBs
Position
26:complement(19162279..19173620)
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AA seq
769 aa
AA seq
DB search
MEGEVVSIETAQVEGLQDSGEGPELLQTVEAALMEGGVAPQVVTGNVEMMVMDTLDSTLD
PALLQMKTEVLEGGGTVTVTGGDEGQIITLQVVNMEGNMEQTSAALGLGQLQLVQVPVTT
ATVEELQASFVDASAGNTEAEPVICHTLPLPEGFQVVKVGANGEVETVEQEELQAAQDEL
QVTHGEEEEEEEAEPQVEDQTWSKDPDYQPTAGIRKGKKGKKSRLRYGEGERDMDVSVYD
FEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKS
HTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDCDMAFVTSGELVRHRRYKHTF
EKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPY
ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFMEMGR
KCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQERHMIMHRRTHTGEKPYACSQ
CEKTFRQKQLLDMHFKRYHDPNFIPTAFVCSKCAKTFTRRNTMLRHAENCNGENTGDENG
TPPKKGRRGRKRKMRSRRDDDDDDTEPELDDIEEEEEELLAEIEVEQAPPVVPVPAPVGP
PAKRKRGRPPKAKPAPTAAIIRVEDETTGEVDDIIVKKEMKAEQASQEEEAVEDEVPAVE
VEHAEGEPANQVEESFQGEEVVQEVALSVTEAPPNGDLTPEMILSMMDR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgaagtcgtttccattgagaccgctcaggtcgagggtctccaggacagtggg
gagggacccgagctgctccagactgtagaggccgccctgatggaagggggtgtggcaccc
caagtggtgacagggaatgttgaaatgatggtgatggacaccctggactcaacccttgac
cctgccctgctacagatgaagactgaggtcctcgaagggggtggcacagtgacggtcacc
gggggagacgagggacagatcatcaccctgcaggtggtgaacatggaggggaacatggag
cagacgagtgcagcgctggggcttggacagctgcagctggtgcaggttcctgtcactaca
gccaccgtggaagaactccaggccagctttgttgacgcctctgcaggcaatactgaggca
gagccagtgatctgccacaccctccctctgcccgagggcttccaggtggtgaaggtgggg
gcgaatggagaggtggagacagttgagcaggaagaactacaggcagcccaggatgagctc
caggtgacacatggggaggaggaggaggaggaggaagctgagccccaagtagaggaccag
acctggtccaaagacccagattaccagccaactgctggcatccgcaaggggaagaagggc
aagaagagccgcctgcgttacggggaaggggaacgggacatggatgtgtctgtatacgac
tttgaggaggaacagcaggaggggatgctctctgaggtcaacgctgagaaggttgtgggc
aacatgaagccgcccaaacccaccaaaataaaaaagaaaggtgtgaagaagacgttccag
tgtgagctgtgtagctacacctgcccccggcgctctaacctggaccgccacatgaagagc
cacacagatgagaggccacacaaatgccacctgtgtgggagggccttcagaacagtcaca
ctgctgaggaaccacctcaacacacacacaggcactcgtcctcataaatgccaagattgt
gacatggcatttgtgaccagtggagagctagtgcgtcatcgtcgctacaaacacacattt
gagaaacccttcaagtgctccatgtgtgactacgctagtgtggaggtgagtaagctgaag
agacacatccgctcccatacaggcgaaaggcccttccagtgcagtctgtgcagctacgcc
agccgagacacttacaaactgaagagacacatgaggacacactcgggtgagaagccatat
gagtgctacatctgccatgctcgtttcacgcagagcggcaccatgaagatgcacatcctg
cagaagcacacagagaatgtggccaaattccactgcccccactgtgacacagtcatcgct
cgcaagagcgacctgggtgtgcacttgcggaagcagcattcgttcatggagatgggcagg
aagtgtcgttactgtgacgctgtgttccacgagcgttacgcactcatccagcaccagaaa
tcccacaagaacgagaagcgcttcaagtgcgaccagtgtgactattgctgcagacaggag
cgtcacatgatcatgcacagacgcacacacacaggggagaagccgtacgcctgcagccaa
tgtgagaaaactttccgtcagaagcagctgctggacatgcacttcaaacgttaccatgac
cccaatttcatccccactgccttcgtctgcagcaagtgtgccaagaccttcactcgcagg
aacaccatgctgcgtcacgcagagaactgtaatggagagaacaccggcgacgagaacggg
accccgcccaagaaaggccgccgcggcagaaagaggaagatgcgctccagacgggatgac
gacgatgatgacaccgagcctgagctggatgacattgaggaagaggaggaggagctgcta
gctgagattgaggtggaacaggcaccaccggttgtccctgtccctgcccctgttggcccg
ccagccaagaggaaacgtggaagacctccaaaggctaaacctgccccaacggcggcaatc
atccgtgtggaggatgagaccacaggcgaggtggatgacataatcgtgaagaaagagatg
aaggcagagcaggcgagccaggaggaagaagctgttgaggatgaggtgccagcagtagag
gtggagcatgctgaaggagagcctgccaatcaggtagaagagtcattccagggtgaggag
gtggtgcaggaagtggcactgtctgtcacagaggctccgcccaacggtgacctcactcct
gagatgattctcagtatgatggaccggtga
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