Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384950
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Entry
139384950 CDS
T10872
Name
(RefSeq) low-density lipoprotein receptor-related protein 3-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139384950
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
139384950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
Motif
Other DBs
NCBI-GeneID:
139384950
NCBI-ProteinID:
XP_070985996
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All DBs
Position
26:35859816..35948080
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AA seq
851 aa
AA seq
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MDRIGAPGLLLVIWILIRLASVCVASCSGKVELHTERRGVIYSPSWPLNYPPGMNCSWNI
EGDRGEVITISFPNFDLEESGQCQGDWLLLGPTWREEYRVCGSLLPPPFISSRGRVWLYF
HSQANSSGLAQGFRLSYIRGRLGQSSCQSDEFLCGNGKCLPRTWRCNGLDECGDATDERS
CAPPPTPPRTSLCPPGTAPCTQAQSTRCLPPSLRCNGARDCPDGSDEAGCPDTACGKRLG
NFYGTFASPDFFRPNRSAVGELRCSWLLDTQDPKPIVLQLDLGLGPGDSLHVYDGLVQRA
ERLLQALSHHNNRRPALLESSRGQMSLQYLAQPLSPGHGFNATYQVKGYCFPGEHPCGLD
QGCYSERQRCDGYWHCPTGRDEEECPVCQEGEYPCEGGSGACYPASERCNNQKKCPDGSD
EKNCFDCQPGNFHCGTNLCIFETWHCDGQEDCLDGSDERDCLGAVPRKVITAALIGSLVC
GLLLVIALGCAFKLYSLRTREYRAFETQMTRLEAEFVQREAPPSYGQLIAQGLIPPVEDF
PVYNPTQASMLQNIRTAMRRQIRRHSSRRATSHRRLGRLWNRLFHRGTRLRGQIPLLTPP
GSQVALGLHSYHTSEGPGARAGDGGGGAGMVGGMAGMGPARTPSRCSTAVGFALHAHTQA
LSQSQSPHPSLESPHSPPSPSDSEPSEGSPCSPEIPGSRVRLPLSELSTPGQQSDSLTSA
PSILSQQCPLEGSTGHYTRRASRKLVLGLAANLRGVALRRYSPMGLTSPVTPPVLPPPDS
QPPCHHPLTSPQTSSPSGSSDDSQSFHALEVPTRERRRRRRGIGVPSGLNTSSSEEEEEE
EEDGDETLLIC
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggatcggattggagcgccggggcttctcctggtcatatggatattaatacggttggct
tcggtctgtgtcgcatcatgcagtggcaaggttgagcttcatacagagagaagaggtgta
atctacagcccctcctggcccctcaactacccccccggaatgaactgttcctggaacata
gagggggacaggggagaggttatcaccatcagcttccctaactttgacctggaggagtca
ggtcagtgtcagggggactggctgctcctaggccccacctggagagaggagtaccgggtg
tgtggctccctcctcccacctcccttcatctcctccaggggaagagtctggctctacttc
cactcacaggccaacagctcaggactggctcaggggttcagactgtcttatatcagaggt
cgcctgggccagtccagctgtcagagtgatgagttcctgtgtggtaacggtaaatgtctt
ccccgaacgtggcgctgtaacggcctggatgagtgcggcgacgctaccgacgaacggagc
tgtgccccccctccgacccctccccgcacctccctctgcccccccggcaccgccccctgt
acccaggcccagtccactcgctgcttgcccccctcgctacgctgcaacggagcccgggac
tgccccgacggctcggacgaggcagggtgccccgacacggcctgcgggaaacgcctgggg
aacttctacggaacattcgcctccccagacttcttccgtcccaaccgcagcgctgtgggg
gagctgaggtgctcctggctactggacactcaggaccctaagcctatcgtgttgcagctg
gacctggggttagggccaggggactccctccatgtctatgatgggctggtccagagagca
gagcgcctcctgcaggccctgtcgcatcataacaacaggagaccagccctgttagaatcc
agtagaggacagatgagtctacagtacctggcccaaccactcagccctgggcatggattc
aacgctacataccaggtgaaaggttactgtttccctggggaacacccgtgcggattggac
cagggctgttactctgaacgccagcgctgtgacgggtactggcactgccctacggggcgc
gacgaggaggagtgtccagtttgccaggagggggagtacccctgtgaggggggcagtggg
gcctgctaccctgcctctgaaagatgtaacaaccagaagaagtgcccagacggttctgat
gagaagaactgttttgactgccagccgggtaacttccactgtggcaccaacctgtgtatc
ttcgagacgtggcactgtgatggccaggaggattgtctggatggtagtgacgagagagac
tgtttgggagctgtacccaggaaggtgatcactgctgccctgattggttctctggtctgt
ggcctcctccttgtcatcgctctgggctgtgccttcaaactctactccctccggacaaga
gagtacagagcatttgagacccagatgacccgtctggaggcggagtttgttcagagagag
gctccgccctcctatggtcagctgatcgcccagggcctcatccctccggtggaggacttc
cctgtgtacaaccccactcaggcctccatgctccagaacatccgtacagcgatgcggagg
cagatcagaagacactcctcccgccgggccacgtcacaccgccgcctggggcgcctctgg
aaccgtctgttccaccgagggacccgtctccgcggccagatcccactcctcacacccccc
gggtctcaggtggctctgggcctgcactcctaccacacctcggagggacctggagccagg
gctggggatggaggtggcggggcgggcatggtgggaggcatggcgggcatgggaccagca
aggaccccctcccgctgctctacagcagtaggcttcgccctgcatgcccacacccaggcc
ctgtcacagtcccagtccccccacccctccttggagtctccccactccccaccctccccc
tctgacagtgaaccatccgagggatctccttgttccccagagatccctggtagcagggtt
aggttgcccctcagcgagctctccacccctgggcagcagagtgactcattaacgtctgcc
cccagcatactgagccagcagtgccccctagagggcagcacaggtcattacactcgccgg
gcctccaggaagctggtcttggggctggctgccaacctgagaggggtggctctacgacgc
tactcccccatggggctcacctcccccgttaccccccctgtccttccccctccagactcc
cagccgccctgccaccaccccctgacctccccccagacgtcatccccctcggggtcttca
gacgacagtcagagtttccatgccctggaagtgccaacccgggagaggaggaggaggagg
aggggtataggggtgcctagtggactgaacaccagcagcagtgaggaagaggaggaggag
gaggaggatggagatgagactctactgatctgctag
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