Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385085
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Entry
139385085 CDS
T10872
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139385085
Coactivators
SAGA/TFTC/STAGA complex
139385085
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
139385085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139385085
NCBI-ProteinID:
XP_070986232
LinkDB
All DBs
Position
26:complement(25743448..25853185)
Genome browser
AA seq
1046 aa
AA seq
DB search
MAGTSDPLEDMLFSEVDEKAVSDLVGSLESQLVGQSNPANTQSENRGAGTTVTANHHLGK
TLPAQVGNVTTLVQQQQQQQQQEGQHKAGMHQEMNTNEISSEKTVTSSSLSSIPSFEEAS
TTSGTGVNATKNGLQSHGTSSITTLPASGGVTTSPLVNSSIISTTTTSRGSALASGQTST
DSVDHPRKRITASLRSASAGIQSLNGTGGAVTSRNNPPAAGTDALINNVSTVSSSASAAN
SSRTVYVTSCVNTTNFTLSSSSISSTQSAIPLDKGTPTIALQRLPSHIVASIAQNGNGTT
VSALVKQGAIGPITSAAASQVNHKKEGSEAKSDAPVQSKIAMSSPLGVVNSVINSVSSPS
AVFNLAATSTASLVMAKPAVNVVGQTTTVGMVRSPSVATATQPLLQPGVQAAQRIVAPQL
IVRPPQQPQTTIQLPPGFTIPPGMVLVRTEMGQLVMVPQQALAQAQAQAQTQAQNNISPR
TATTTAGATFRATTPQSPVTSQAIRPCPPPVQAKMVLSPTPSPVLQISSSPAPPSKGPMA
PVVAVTAPQQAPVVMAPQVQAGAQAASQPALPQQTSAPVAPGASVISQEMQENVKKCKNF
LATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTNRLQSELKSSPQPYLVPFLKK
SLPALRLSLLNIQHSLIQPLPQAKATPTTGTSSAIMAGPAVRGRLPNSVSTTGASVGAQG
HTAALGIKQAGTAGCQVRMPMLITPLRTQGTVTKGATFQAGKSPVGFAVKGSGNQKNKLN
DPGGGSFRDDDDINDVASMAGVNLNEESARILATNSELVGTHIRSCKDEAFLHPGLLHRR
ILETAKKFGVSEVPMEAVNFISHATQSRLRTVLEKVSSIAQHRMDGGKDEEWFEQSADVR
SQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQEMALVRQ
RDANLTALAAIGPRKKRKMDSPGATPSGAEVSGSSVGSPGAASSPSTSSQRQRQRITRVN
LRDFIFYMEQERETAHSLLLYRALLK
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcacctccgacccactggaagatatgctattttccgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacaaagcaaccctgcaaat
actcagtcggaaaacagaggtgctgggactacagtcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtaacgttactacactagtacagcagcagcagcagcaacaa
caacaagaaggacaacataaagctgggatgcaccaggagatgaacactaacgaaattagc
tcagagaaaactgttacatcttcttcgctgagctctattccgtcctttgaggaagcttcc
accacttcagggactggagtaaacgctaccaagaacggtttgcaatcacatggaacatca
tctatcacaacactacctgcatctggtggtgtaacaacttctccgcttgtcaacagcagt
atcatcagcaccaccaccaccagccgaggttccgctctggcttcaggtcagacctcaaca
gacagtgtcgatcatccaagaaaacgcataactgcatcgttacggagtgcatcggcggga
atacagagtttgaacggtaccggaggagcggtaacgtcaaggaataatccccctgccgcg
ggaactgatgcgttgattaataacgttagcactgtgtctagcagtgcaagtgcagcaaac
tcaagtcggaccgtttacgttacatcttgtgtaaatacgacgaatttcactttatctagc
tccagcatttcctcaactcaatcagcgattcccctggataaggggactcctactattgct
ttgcaaagactaccaagtcacattgtagcgagcatcgcgcagaatggaaatggcactacc
gtctcggccttggttaaacaaggcgcgataggaccgatcacttctgcagcagcttcgcaa
gtgaaccacaaaaaagagggttctgaagcgaagtcggacgctcccgtgcagtccaaaata
gccatgtccagtccgttaggtgttgtcaattccgtaataaactctgtttcctctccctct
gctgttttcaacctagcagcgacttctactgcaagtcttgtcatggcaaagcctgctgtc
aatgttgttggacaaacaacaacggttggaatggtaaggtctccgtctgtggccacagct
acacagcctctgcttcaaccgggagtccaagcagctcaaagaattgttgccccccagctg
attgtcagacccccccaacaaccacagacgaccattcaactgccacctgggtttaccatc
ccaccgggaatggtgttggtgcgcactgagatgggtcagctggtgatggtcccacagcag
gcccttgcccaggcacaggcccaagcccagacccaggcccagaacaacatctccccccga
actgccaccaccactgcaggggccaccttcagagcaactaccccacagtctcctgtgacc
tctcaggctattcggccatgtcctcctcctgtccaggccaagatggtgctgtctcccact
cctagccctgtcctccagatctcctcctcccctgcgccaccttctaagggccccatggcg
ccggtcgtggcagtgacggctccccaacaggcccccgtggtgatggccccccaggtccag
gctggggcccaggccgcctcgcagccagccctaccccagcagaccagcgcccctgtagcc
ccaggagcctctgtcatctcccaggagatgcaggagaatgtgaagaagtgtaagaacttc
ttggccaccctgataaagctggcctcccacaactctccgtcacccgagacctccaaaaat
gtcaagtcactggtccaggatctactggatgctaagattgagcctgaggagttcaccaac
agactgcagtcagagctcaagtcgtctcctcagccctacctggtccccttcctcaagaaa
agcctcccggccctgcggctgtctctgctcaacattcagcattccctgatccagcctctg
ccgcaggccaaagccacccccaccacaggcaccagctctgccatcatggccggcccagct
gtccgcggccgcctccccaacagcgtcagcaccacgggggccagtgtcggggcccaggga
cacacagctgccctgggtatcaagcaagcgggcaccgctggttgccaggtcaggatgccc
atgttgatcacaccattaagaacacaaggcactgtcaccaagggagccacattccaagca
ggcaaaagtcctgtgggttttgctgttaagggctctggaaatcagaaaaacaagctgaac
gatcccggaggcggttctttcagggatgatgatgacattaacgatgtggcgtccatggcg
ggggtgaacctgaatgaagagagcgctcgtatcctggcaaccaactctgagctggtgggg
actcacatccgctcctgtaaagatgaggccttccttcacccgggcctgttacacagacgc
atcctggagacagctaagaagtttggcgtgtcagaggttcctatggaggctgtgaacttc
atctcccacgctacccagtcccgactccgcactgtgctggagaaggtctcctccatcgca
cagcacaggatggacggtggtaaagatgaggagtggtttgagcagtcggcagacgtgcgg
tcgcagctaaagttctttgagcagctggagaggatagagaagcagaggaaggatgaacag
gagagagagatcctactcaaagcagctaaaagtcgctccaggcaagaggacccagagcag
gctcggctgaaacaaaaagctaaggagatgcagcaacaggaaatggccctggtgaggcaa
cgagacgcaaacctgaccgcgctagctgccatcggacctcggaagaaacgcaagatggac
tcgccaggggccacgccgtcaggggccgaggtatcaggcagctcagtggggtcgccgggt
gccgcctcctccccctccacgtcgtcacagcggcaacgtcaacgcatcacccgcgtcaac
ctcagggacttcatcttctacatggagcaggagagagagacagcccactcacttctgctc
taccgggctctgctcaagtag
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