Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385479
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Entry
139385479 CDS
T10872
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139385479
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139385479
Transporters [BR:
ocla02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
139385479
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
139385479
NCBI-ProteinID:
XP_070986652
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Position
27:32131690..32139163
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AA seq
594 aa
AA seq
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MLVMVKEGCAVKEGSAKVKMEERGHWGSKTEFLLAVAGNVVGLGNVWRFPYLCYKNGGGA
FLVPYLVFVMTCGVPLFLLETAMGQYTQEGGITCWKRLCPLAEGIGYAGQLILLYSCMCY
IIILAWALFYLVFSFSAQLPWASCTNPWNTDDCVDFSSQNRTFNWTGQMNSTSAATEFWE
RRVLAISGGIEEVGSIRWEVLLCLIVMWVICYFCIWKGVKSTGKVVYFTATFPYAMLLVL
LIRGLTLPGALQGVLFYLYPEPDRLSDPQVWMEAGSQIFFSYSVGVGSLTVLGSYNTYNN
NCYKDCLWLCLLNSGTSVVAGFAVFSVLGFMAHEQGVPIEEVAESGPGLAFIAYPQAVAM
MPLPQMWAACFFIMIILLGLDTQFVAMEVVMTSVSDLFPTVLRWTGRRELFLLFFCLTCF
FFQLIMVTEGGMYVFQLFDYYACNGTCLLFLSVFESLAMGWIFGAERMYGVIEDMTGMRP
NPVFKLCWLYLTPLVSLVSFICSLVEYQPLTFNRWYVYPGWVYVLGWLLALSSIVLVPGW
ALLQICIGTGSLRERFLHLCRPDNDLPLTRKRKAVLWSRDGGTLMTAARESTDN
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgatggtgaaggaaggatgtgcagtgaaggagggatcagcgaaggtgaaaatg
gaggagagaggtcattggggcagcaagacggaatttcttctggccgtagcagggaacgtg
gtgggactaggtaacgtgtggagattcccctacctctgctacaaaaatggtggaggggcg
ttcctggtgccgtacctggtgtttgtgatgacctgcggggtgcccttgttcctgctggag
acggccatgggacagtacactcaggaggggggcatcacctgctggaagaggctgtgccca
ctggccgagggtatcggctatgcagggcagttgatccttctctacagctgtatgtgttac
atcatcattttggcctgggctctgttctacctggtcttctccttcagcgctcagctcccc
tgggcaagctgcaccaacccctggaacactgatgactgtgttgacttctcctctcaaaac
cgtactttcaattggactggacagatgaactcaacctctgcagccactgaattctgggag
cgtcgtgtgctggccatctcggggggtatagaggaggtgggtagtatcaggtgggaggtg
ctgctctgtctcatcgtcatgtgggtcatctgctacttctgcatctggaaaggggtcaag
tcaacaggcaaggttgtatatttcactgctaccttcccctacgcgatgctgctggtacta
ctgatcagaggcctgactctgccaggggccctgcagggggtcctgttctacctctaccct
gaaccagaccggctctctgacccccaggtgtggatggaggccggctcccagatcttcttc
tcctacagtgtgggagtgggctccttaaccgtgctgggctcctacaatacctacaacaac
aactgctacaaagactgcctgtggctgtgcttgctgaacagcggcaccagcgtggttgct
gggttcgcagtcttctcagtcctggggttcatggctcatgaacagggcgtccccattgag
gaggtggcggagtcaggtcctgggctggcgttcatagcgtacccccaggcagtagccatg
atgcccctgcctcagatgtgggctgcttgtttcttcatcatgatcattctactgggtctg
gatacacagtttgttgccatggaggtggtgatgacgtcagtatcagacctgtttcccaca
gtgctgcggtggactgggcgcagggagctcttcctcctcttcttctgtctcacctgcttc
ttcttccaactcatcatggtcacagagggtgggatgtatgtgttccagctgtttgactac
tacgcctgtaacggaacctgtttgctcttcctttctgtgttcgagtccctggccatggga
tggatatttggtgcagagcgtatgtatggcgtaatagaggacatgacagggatgaggcct
aaccccgtcttcaagctctgctggctctacctgacccctctggtttccctggtgtcgttc
atctgctctctggtggagtaccagcccctgaccttcaaccgctggtatgtgtacccagga
tgggtgtatgttctgggctggctgttggccctctcctccatcgtcctggtccccgggtgg
gccctgctgcagatctgcatcgggacaggcagccttagagagcgtttcctccacttgtgt
cggccagacaatgacctcccgttgacccggaagagaaaggctgtcctctggagcagagat
ggaggtacactcatgactgcagcaagggaaagcacagacaactga
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