Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385577
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Entry
139385577 CDS
T10872
Name
(RefSeq) cell adhesion molecule DSCAML1-like
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139385577
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Other
139385577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
C1-set
V-set_CD47
Ig_6
fn3_2
DUF1461
ChitinaseA_N
Motif
Other DBs
NCBI-GeneID:
139385577
NCBI-ProteinID:
XP_070986856
LinkDB
All DBs
Position
27:complement(6167212..6333530)
Genome browser
AA seq
2164 aa
AA seq
DB search
MTVPARGGCGRRDQISGRSTALASLGLGLERSPVSIVTTPAPSLVWPNTAPCTRRDCTTF
LRNIPAIYGMWLVTLFLLYSFQEVNSEDVVSTRLYFVNASLQRVTFSSSVGVSLPCPAGG
APHAVLRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGK
IRSPSIRIKAVFREPYTVRVADQRSMRGNVAVFKCLIPSAVQEYVSVVSWEKDTVSMVPG
NRFFLTSFGALYISEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESTPSVLDS
FQSGEVQVGHNVELPCIASGYPNPTIRWLKDGRPLPADSRWTRRLTGLTVSDLRLGDSGN
YICEVTNSFGSKEVTGHLNVIEPLRVTLSPKNLKTGISSTVILSCSVQGSPHFTLSWYRN
TEPVLPDQHFSIQGAHNETLFISAAQKRHSGAYQCFATRKGQTAQDFSIILLEDGTPRIV
SSFSERVVVPGEPFSLMCAAKGAPPPTITWTLDDEAVARDPSRVRASQYTLSDGSTVSHV
NVSSPEIRDGGVYRCAARNSAGSAEYQARINVRGSPRIRDMRNITAVAGRNTFINCRVIG
YPYYSIKWYKEGLLLPDNHRQVVYENGTLKLSDVQKVLDEGAYLCSVLIQPQIFISQTVY
VQVKVPPLIQPFDFPPTSIGKLMYIACVVSSGDMPIHITWRKDGQEVAPSSGVNIETKEY
MSSLQIGKVSLKHNGNYTCIASNDAATVSSERQLTVTVPPQFVVQPNNQDGIYGKAGVLN
CSVDGYPPPKVMWKHAKGTGNPQQYHPVPLTGRIQIMGNGSLLIRHVLEEDRGYYLCQAS
NGVGSDISKSMVLTVKIPAMITSHPNTTMAIKGQIKELNCTARGEWPIIIRWERGDTVID
PDRNPRYAITTSPNEKSDEVLSTLKLKPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPP
DPPELEVREVKDRSMNLRWTQRFDGNSIITSYDIEYKNKTDPWELKHATRKISPTNNQAN
IVDLHPAQVYSIRMFSYNKIGHSQASKELTISTEEAQPDGPPMEVFLQPMTSQSIRVTWK
APRKELQNGVIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQA
FNRAGTGPSSSEINATTLEDVPSQPPQTVRAISVTSDEAVITWAEPPRLTLHGVLKGYRV
VFWSLFPDGGGCCGGPIYPQARAQGHGQKWGEMQNITTTREQVELRGLEKFTNYSVQVLA
YTQAGDGVRSNVLYIQTREDHPGPPAGIKAVPSSTSSVVVSWLPPHKPNGIIRKYTIYCS
SPGSGQPAPSEYEANPELLFYRVTHLNRGQQYLIWAAAVTTAGRGNISDKVTVEPAGKAP
AKILSFGGTVTTPWMKEVRLPCSSVGEPTPTIKWTKDSEDTAIPVTLDGQRLIMANGTLV
LRLVKAEDSGYYTCTATNTLGFDTIIVNLLVQVPPDQPRLTVSTTSPTSITLAWIPGDNG
GSSIRGFVLQYSVDNMEGWRDVFISSSERSFKLDNLRCGTWYKVKLAAKNSVGAGRISEI
IEAKTHGREPQFNKEQPVFTHVNSTHARLNLQGWASGGCPITAVLLEFRPKGNWAWQNVR
TNATADVFLAELREATWYELKMKACNSAGCGNQSSQFATLDYDGSTIPPIKSARPEGDDV
KKLFSIGCPVILVTLVVALLFIIRKKRKEKRLKRLRDAKSLAEMLISSKNNRSFDTPVKG
PPQGPRLHIDIPRVQLLIEDKEGIKQIGEDKATIPVTDTEFSQNVNPQSFCTGVSVHHPA
LIQNTGPLIDMSDIRPGTNPVSRKSVKSAHSTRNRYSSQWTLTKCQSSTPARTLTSDWRT
VGSQHGITVTESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAK
FEITECFISDSSSDQMTTGTNDNGDSMTSMSTPSETGLCRFTASPPKPQEYDRGRPTNVA
VPIPHRANKSEWTGKSDYCNLPLYMKTDPFFRKQSELHDPCPVVPPREAPSRSLAQRAYH
TQGRHMTLDSSKQQQALTVGHAGLAGLSASGGASGGGGGVGGATGGPSGGSSTTSLSQRT
LTMPGSSSSSAQSAAAAAAASASGGATGGDSRDPLLESSSSGLGRLERQKQAAGGAYSKS
YTLV
NT seq
6495 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcccggctaggggagggtgcgggaggcgggaccagatcagtggccgttccacg
gcgctggcgagtctgggactagggctggagagatcgccggtgagcatcgtcaccactcca
gcaccgagcctcgtctggccgaacactgcgccgtgcactcgtcgggattgcacaacattc
ctgagaaatatacctgctatttatggcatgtggctggtaactttattcctgctgtactct
ttccaagaagtgaacagtgaggatgtggtctcgacgcggctgtactttgtaaacgcctcc
ctgcagcgggtgaccttctccagctcggtcggggtgtccctgccctgcccggcgggcggc
gcaccccatgccgtcctgcgctggtacctggccaccggcgacgacatctacgatgtgccc
cacatccgccacgtgcacgccaacggcaccctccagctctaccctttctcgccctccgcc
ttcaacagctacatccatgacaacgactacttctgcaccgcagagaaccaggccggcaag
atccgcagccccagcatccgcatcaaagcagtgttcagggagccctatacggttcgggtg
gcagaccagcggtccatgcgaggcaacgtggccgtgttcaagtgcctcatcccctcggct
gtgcaggagtacgtcagcgtggtgtcctgggagaaagacaccgtctccatggtgccaggg
aaccgtttcttcctgacgtcattcggggccctgtacatatcagaggtccagaaggaagat
gccctgtccacctaccgctgcatcaccaagcacaaatacagtggagagactcgccagagc
aatggagccaggctgtctgttatggaccctacggagtccaccccctcagtgttggacagt
ttccagtccggggaggtccaggtggggcacaatgtggagctgccctgcatcgcctcgggg
taccccaaccccaccatccgctggctgaaggacgggcgcccgttgcccgccgactcccgc
tggactcgccgtctcacgggcctgacggtcagcgacctgcgtctgggcgacagcggcaac
tacatctgtgaggtcaccaacagcttcggctctaaagaggtgaccggtcatctcaacgtc
atcgagccgttgagagtgactctgtctcctaagaacctgaagacgggcatcagcagcaca
gtgattctgtcgtgttccgtgcagggttctccccacttcaccctgtcctggtaccgcaac
acagaacccgtcctccccgaccagcacttctccatccagggggcccacaacgagaccctg
ttcatctccgctgcccagaagagacattcgggagcctaccagtgcttcgccacccgcaag
ggccagaccgcacaggacttctccatcatactgctggaggatggtacgccccgtatcgtg
tcctccttcagtgagcgagtggtggtcccaggggaacccttctccctcatgtgtgctgcc
aaaggcgcccctccccccaccatcacctggactctggatgatgaggctgtggccagggac
ccgtctcgggtgagggccagccagtacacactgtcggacggctccaccgtgtcccacgtc
aacgtcagcagcccggagatccgcgacggaggggtgtatcgctgcgccgcacgcaactcg
gccggtagcgccgagtaccaagcgcgcataaacgtaagaggttctcccaggatcagggat
atgcgtaacatcacggcggtggctgggaggaacacctttataaactgccgtgtgattggc
tatccctactactcaatcaagtggtacaaggaggggcttctgctgcccgacaaccatcgt
caggtggtgtatgagaatggtactctgaagctaagtgacgtccagaaggtgttggacgag
ggggcgtacctctgcagcgtgctcatccaaccacagatcttcatcagtcagaccgtctac
gtccaagtcaaagtgccccctctgatccagccctttgacttcccccccacctccattggg
aagctcatgtacatcgcctgcgtggtgtcgtctggcgacatgcccatccacatcacctgg
cgaaaggacggccaggaggtcgcgccctcgtccggcgtcaacatcgagaccaaggagtac
atgagctcgcttcagatcggcaaggtgtcgctcaagcacaacggcaactacacctgcatc
gctagcaacgacgccgccaccgtcagctctgagaggcagctcactgtcacagtgcctcct
cagtttgtggtccagcccaataaccaggacgggatctacggcaaggcgggggtcctcaac
tgctccgtggacggatacccccctcccaaagtcatgtggaagcacgccaaaggtacaggg
aacccccagcagtaccacccagtgcctctgaccggtcggatccagatcatggggaacggc
tccctgctgattcgtcacgtcctggaggaggaccggggctactacctgtgtcaggcctcc
aacggggtgggctccgacatcagcaagagcatggtcctgaccgtcaagatcccagcaatg
atcacgtcgcaccccaacaccaccatggccattaagggacagattaaggagctgaactgc
acagcgaggggggaatggcctatcatcatccgttgggagcgcggtgacacggtcatcgac
cccgaccgtaaccctcgctacgccatcaccaccagccccaacgagaagagtgacgaagta
ttgtctacgctgaagctgaagccagcagaacgtggtgactcggtcttcttctcctgccat
gccatcaactcctatggagagggacggggactcattcagctcactgtgcaagagccccca
gaccctccagagttggaggtgagggaggtgaaggatcggagtatgaacctgcgctggacc
cagagatttgacggcaacagcatcatcaccagctacgacattgagtacaagaacaagacc
gatccatgggagttgaagcatgccacccgtaagatctctcccaccaataaccaggccaac
atcgtggatttacaccctgcccaagtctacagcatccgcatgttctcctacaacaagatc
ggacacagtcaagccagcaaggagctcaccatcagcaccgaggaagcgcagcccgatggt
cctcctatggaggttttcctccagcctatgacctcgcagagcatccgcgtcacctggaag
gcccctaggaaggagcttcagaacggggtgatccggggttaccagattggttaccgtgag
aacgggccgggcagtaacggccagtacagtatcgttgagatgaaggctacaggggacagt
gaggtgtacaccctggacaacctgaagaagtttgcccaatatggagtggtggtccaggcc
ttcaacagggccggcacaggcccctccagctctgagatcaacgctaccacactggaagat
gtgcccagccagccgccccagaccgtgcgggccatctcggtgacatccgacgaggcagtg
atcacctgggcggagcccccgcgtctgacactgcacggcgtgctgaagggttaccgtgtg
gtcttctggtccctcttccccgacggaggtgggtgctgtgggggcccgatttacccacag
gcacgggcacagggccacgggcagaagtggggagagatgcagaacatcacgacaacccgt
gagcaggtggagctgagagggctggagaagttcactaactacagtgtgcaggtgctggcc
tacacccaggctggggacggggtcaggagcaatgtgctgtacatccagacccgcgaggac
caccctggccccccggctggcatcaaagctgtgccctcatccaccagcagtgtggtggtt
tcctggctacccccgcacaagcccaatggaatcatccgcaagtacaccatctactgctcc
agccccggatcaggccaaccagcccccagtgagtacgaggccaaccccgagctgctgttc
taccgggtcacccacctgaaccgcggacagcagtacctcatctgggctgccgccgtcacc
accgccggacgggggaacatcagcgacaaggtcactgtggagcctgctgggaaggcccca
gctaagatcctatcgttcggaggtacagtgaccactccctggatgaaggaggtgaggcta
ccctgcagctcagtgggcgaacccacccccaccatcaaatggaccaaagacagtgaggac
actgccatcccggtgactctggacggtcagaggctcatcatggccaatggcacgctggtc
ctgcgcttggtgaaggctgaggattctgggtactacacgtgcacggccaccaacacgctg
ggctttgacaccatcattgtcaacctgctggtgcaagttcctccggaccagccccgtctg
actgtctccaccacctcccccacctctatcaccctggcctggatccccggggacaacgga
ggatcctccatcagaggtttcgtgctgcagtactcggtggacaacatggaggggtggagg
gatgtgttcatcagttccagtgagaggtccttcaagctggacaacctgcgctgtggcacc
tggtacaaggtcaaactggccgccaagaacagcgtgggagcgggacgcatcagtgaaatc
atcgaggctaagacccacggacgagagccccagttcaataaggaacagccggtgttcacc
cacgtcaactctacccacgcccggctcaacctgcagggctgggcaagcggtggctgcccc
atcacggccgtgctgctggagttcagacctaaggggaactgggcgtggcagaacgtgcgc
accaacgccacggccgacgtgttcctggctgagctccgcgaggccacctggtacgagctg
aagatgaaggcgtgtaacagcgccggctgcgggaaccagagctctcagttcgccacgctg
gactacgatggcagtaccatccctcccatcaagtcagcgcggccggagggcgacgacgtt
aagaagctcttctccatcggctgccccgtcatcctggtcactctggtcgtcgccctgctc
ttcatcatccgcaagaaacgcaaagagaagagactgaagagactgagagatgccaaaagc
ctggctgagatgctgatcagcagtaagaataaccggagctttgacacccctgtgaaaggc
cccccccagggcccccgactccacatcgatatccccagagttcagctgctcatcgaggac
aaggaaggcatcaagcagatcggtgaagacaaagccaccatcccagtgacggacacagag
ttcagccagaatgtgaatccacagagcttctgtacgggcgtgtctgtgcatcaccccgcc
ctcatccagaacaccggccctctgattgacatgtccgatatcagaccagggaccaacccg
gtgtcgaggaagagcgtgaagtcggcccacagtacgaggaaccgctactccagccagtgg
accttgaccaagtgccagtcgtctacgcccgcccgtaccctcacctccgactggcgcacc
gtgggctcccagcatggcatcactgtcaccgagagtgacagctacagcgccagcctctca
caggacacggataaggggcgtaacagcatggtgtcaacagagagcgcgtcctccacctac
gaggagctggcgcgggcctacgaacacgccaagcttgaggagcacctgcagcacgccaag
tttgagatcaccgagtgcttcatctccgacagttcctcagaccagatgaccacgggcacc
aacgacaacggcgacagcatgacctccatgagcacgccgtccgagacgggcctgtgtcgc
ttcaccgcctcgccacccaaaccccaggaatacgaccgcggaagacctaccaacgttgcc
gtgcccatcccccaccgcgccaacaagagcgagtggactggcaaaagtgactactgtaac
cttcccctctacatgaagacagaccctttcttccggaagcagtcggagctgcatgacccg
tgcccggtggtgccgccccgcgaggcccccagccgcagcctggcccagcgggcgtaccac
acccagggccgccacatgactctggactcctccaagcagcagcaggctctgactgtgggc
cacgcaggcctggccggcctcagcgcctcagggggagcatcagggggtggtggtggtgta
ggaggggcgactggagggccgtctggtggttccagcaccacctccctgtctcagaggact
ctcaccatgcccggttcctcctcttcctctgcccagagcgctgctgctgccgctgccgcc
tcggccagcgggggagccacggggggagactccagagaccctctgctggagagcagctcg
tcaggcctgggcagactagagagacagaagcaggcggctggcggggcctactccaaatcg
tatacactggtgtag
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integrated database retrieval system
