Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385612
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Entry
139385612 CDS
T10872
Name
(RefSeq) coatomer subunit beta'-like
KO
K17302
coatomer subunit beta'
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139385612
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139385612
Membrane trafficking [BR:
ocla04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
139385612
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
139385612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_LRRK2
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
139385612
NCBI-ProteinID:
XP_070986925
LinkDB
All DBs
Position
27:30200723..30236997
Genome browser
AA seq
1481 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMVASLYNGSVCVWNHETQTLVKTFEVCDLPV
RVAKFVARKHWIIAGADDMQIRVFNYNTLERAHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWVCGQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHTQNVSCVSFHPE
LPIILTGSEDGTVRVWHSSTYRLENTLNYGMERVWCVCGQRGANSVALGYDEGSIIIKLG
REEPAMSMDSNGKIMWAKHSEVQQANLKAMGEAEIQDGERLSLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWGHDSSEYATRESTSMVKIFKNFKE
NKSFKPDFGAEGIHGGFLLGVRSVSGLAFYDWENTELVRRIEIQPKHVFWSESGELVCIA
TEESFFVLRYLAEKVATAQETKEGVTEDGIEDAFEVLGEIQEVVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTVAHLDRTMYLLGYIPKDDRLYLGDKELNIVTYSLLVSVLEYQTAVMR
RDFGMADRVLPTIPKEMRTRVAHFLEKQGFMQQALAVSTDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELATTKCQFVLAQECLHHAQDYGGLLLLATASGNTTMVGKLAEGAE
RDGKTNVAFLTYFLQGKLDKCLELLIKTNRLPEAAFLARTYLPSHVSRVVNLWKESLGKV
NQKAADALANPTDYSNLFPGLQEAFLAEEYLKETHVRLRPAAEYPLITSNENRNVLGESA
DYVPKVAAEPEVAGSMDEPPVLEAVVEAPVMAAVVEAAAPEAPVVEESIVMEEVEPVAAA
VVEFIPAVEESIPVTVVEPTMAAVEESIELAEEEPIIVEVEAPKPKQATSVEDILTKIEA
LVTIENDTEAPLLVPEVAQSTPEEEFRATPEEAVEEGPATMKPIATDAPVTESVTEPIVT
EAPVAEEAPVPIATEPEPVTIEAVVEAEAPIAAAVLEAIATEPMVTEQAPVTIEVAVAAE
APITEAVAEAIAASEKAPVIVEENEPVPAPLIDLAPAIDLVPARDLVPAIDLVPARDLAP
ARDLASAIDLSPAPLIDLAPARDLASAIDLAPAIDLAPAPLIDLAPARDLAPARDLAPAR
DLAPAPFIDLAPAIDLASAIDLARDLAPAPLIDLAPARDLAPARDLASAIDLAPAPLIDL
APAIDLAPAPLIELAPLIDLAPAIDPATTPTVEDKAAAAPAVEPLPALTQVVPPGAELAP
AAPLAALLEGKGVEEAAPAAPLAALLEGKGVEEAAPAASLAALLEGKGVEEAAPLAALLE
GKVMEAAPLAALLEGKGMKEAAPVAALLEGKVMEAAPLAAFLEGKVMEAAGMEEAAPVAV
ATASMDLLDLNDEGLDDLDMFDLDDDIDTTDVNLDDDFLDD
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgcctctccggttggacatcaagcggaagctgaccgctcggtcggaccgtgtgaagagt
gtggacctgcacccaactgaaccatggatggttgccagcctgtacaatggcagtgtctgt
gtctggaaccacgagacacagaccctggtgaagacattcgaggtgtgtgacctgccggtg
agagtggctaagtttgtggcgaggaagcactggatcattgctggagcagatgacatgcag
atccgtgtgtttaactacaacactctggagagagctcacatgtttgaggcccactctgac
tacatccgctgcatcgcagtccacccaacacaaccttacatccttaccagcagtgatgac
atgctgatcaagctttgggactgggacaagaagtgggtgtgtggtcaggtgtttgagggc
cacacccactatgtcatgcagatcgtcatcaaccctaaagacaacaaccagttcgccagc
gcctccctggacaggaccattaaggtgtggcagctgggatcttcctcccctaacttcact
ctggagggccatgagaaaggagtcaactgtatcgactactacagcggaggggacaagccc
tatcttatatcaggagctgacgaccgcctggtcaagatctgggactaccagaataagaca
tgtgtgcagactctagagggccatacccagaatgtgtcctgtgtcagctttcaccctgag
ctgccaatcattctcacaggctccgaggacggcacagtgagagtctggcattccagcacg
taccgcctggaaaacacactgaactatgggatggaacgtgtgtggtgtgtgtgtggccaa
cgaggcgccaacagtgtggcgctgggatatgatgaaggcagcatcatcatcaagttgggt
cgcgaggaaccagccatgtctatggactctaacggtaagatcatgtgggccaagcactct
gaggtgcagcaggccaacttgaaggccatgggagaggctgagatacaggacggagagagg
ctgtccctggccgtcaaagacatgggcagctgtgaaatctatccccagaccatccagcac
aaccccaacggcaggtttgtggtggtgtgtggggatggagagtacatcatctacactgca
atggccctgaggaacaagagcttcggttcagcacaggagtttgtctggggccacgactcc
tcagagtatgctactcgggagagcaccagcatggtcaaaatcttcaagaacttcaaggaa
aataagtcttttaaaccagactttggggcagaaggtatccatggtgggttcttgctgggc
gtgagatcagtgagtggtctagccttctacgattgggagaacacagagctggtccgccgc
attgagatccagcctaaacacgtcttctggtcagagtctggggagctggtgtgtattgcc
acggaggagtctttctttgtgctacgttacctggctgagaaagtggcaacagcacaggag
accaaggagggagtcactgaggatgggatagaggatgccttcgaggtgttgggtgagatt
caggaggtggtgaagactggtctgtgggtgggagactgtttcatctacaccagctcagtc
aacagactcaattactacgtaggaggagagattgtcaccgtcgcccacctggacagaact
atgtacctgttgggctacatccctaaggatgaccgtctgtatctgggtgataaggagctg
aacatcgtcacttactctctgctggtgtcggtactggagtaccagacagctgtaatgagg
agggactttgggatggccgacagggtcctacccaccatccctaaagagatgaggaccagg
gtcgcccactttttagagaaacagggtttcatgcagcaggctctggctgtgtccacagac
tcagaacacaggtttgagttggctctgcagctaggagaactgaagatcgcctaccagctg
gctgtagaggctgagtcggagcagaagtggaagcagttggcagagctggccaccactaag
tgccagtttgtcctggcccaggagtgtctgcaccatgcccaggactatggggggctactg
ctgttggccacagcctcgggcaacaccaccatggtgggcaagctggcagagggggcagag
agagatggcaagaccaacgtggctttcctcacctatttcctccaggggaaactggacaaa
tgtctggagctcctcattaaaaccaaccggctgccagaggctgcattcctggccagaaca
tacctgcccagccatgtgtctagagtggtgaatctgtggaaggagagcctggggaaggtg
aaccagaaggcagctgatgcgttggccaaccctacagactacagcaacctgttccccggc
ctacaggaggccttcctggccgaagagtacctcaaggagacccacgtcaggctgaggccc
gccgcagagtaccctctcatcacctccaatgagaataggaatgtcctgggggaatctgca
gactatgtgccaaaagtagcagctgaaccagaggttgctgggagcatggatgaaccccct
gtattggaagcagtggtagaagcccctgtaatggcagcagtggtggaggctgcagcccca
gaagctccagtagtggaagagtccattgtaatggaagaggtagaacctgttgcagctgca
gtagtggagtttatcccagcagtagaagaatctatcccagtgacagtagtggaaccaact
atggctgcagtggaagaatccattgagttggcagaagaggaacccattattgttgaagtg
gaagctcccaagccaaagcaggcaacatcagtggaagatatcctcactaagatagaggct
cttgtcaccatagaaaatgacacagaagcacccctcttggtgccagaggtagcacagtcc
accccagaggaagagttcagagcaacaccagaggaggccgttgaggaaggacctgcaaca
atgaagcccatagcaacagatgcacctgttacagagtcggtcacagaacccattgtaaca
gaagcaccagttgccgaggaagcgccagtgcctatagcaacagaaccagaacctgttacc
atagaagcagtggtggaagctgaagcacccattgccgcagcagtactagaagccatagca
acagaacccatggttacagaacaagcacctgttaccattgaagtggcagtggcagcagaa
gcacccattactgaggcagtagcagaagccatagcagcatctgaaaaagccccagtcatt
gtagaagagaatgaacctgtcccagcaccactcatagacctagccccagccatagaccta
gtcccagccagagacctagtcccagccatagacctagtcccagccagagacctagcccca
gccagagacctagcctcagccatagacctatccccagcaccactcatagacctagcccca
gccagagacctagcctcagccatagacctagccccagccatagacctagccccagcacca
ctcatagacctagccccagccagagacctagctccagccagagacctagccccagccaga
gacctagccccagcaccattcatagacctagccccagccatagacctagcctcagccata
gacctagccagagacctagccccagcaccactcatagacctagccccagccagagaccta
gccccagccagagacctagcctcagccatagacctagccccagcaccactcatagaccta
gccccagccatagacctagccccagctccactcatagaactagcaccactcatagaccta
gccccagccatagatccagctacaacaccaactgtagaggacaaggctgcagcagcccca
gcagtagagcccctaccagcactcacccaggtggttccaccaggcgcagagctagcccct
gcagcccctctagctgccctcttagagggtaaaggtgtggaggaggcagcccctgcagca
cctctagctgccctcttagagggtaaaggtgtggaggaggcagcccctgcagcctctcta
gcagctcttttagagggtaaaggtgtggaggaggcagcccctctagctgccctcttagag
ggtaaagttatggaggcagcccctctagctgccctcttagagggtaaaggtatgaaggag
gcagcccctgtagctgccctcttagagggtaaagttatggaggcagcccctctagctgcc
ttcttagagggtaaagttatggaggcagcaggtatggaggaggcagcccctgtagcagta
gcaacagcatccatggacctgctggacctgaatgatgagggccttgacgacctggacatg
tttgatctggacgacgacatcgacaccacagacgtcaatctggacgatgacttcttagac
gactga
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integrated database retrieval system
