Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385698
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Entry
139385698 CDS
T10872
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1-like
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139385698
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139385698
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
SALM family
139385698
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
139385698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
fn3
Ig_2
ig
LRR_5
LRR_9
Ig_DSCAM-DSCAML_C
DUF4834
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
139385698
NCBI-ProteinID:
XP_070987072
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All DBs
Position
27:21659072..21666256
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AA seq
769 aa
AA seq
DB search
MERLVVCVLLCVLLCAVLVKGYNCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVEL
RLTDNFITIIRRKDFFNMTSLVHLTLSRNTISQITPHAFLGLRSLRALHMDGNRLSVIKS
DHFKGLVNLRHLILGNNQIHHVAPTSFDEFVSTIEDLDLSNNNLRTLPWEEIGRMSHINI
LTLDHNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDAKGSNPSSLAV
SFGGNPLHCNCELLWLRRLTRHDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKNLST
KPYVMEGQGVTLKCKAMGDPDPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGA
FNCVASNAAGIATAAVEINMIPLPLFVNNTLHHMREADRGLSDITTSSKSGNDTKGHDKH
QDRRVVVVELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKTFLINDL
AAGREYDLCVLAVYDDGITSLTATRVVGCVQFHTASEVSQCRFIHSQFLGGTMIIIIGGI
IVASVLVFIIILMIRYKAHSSPEDSKVKVSSSMHSQTNGSQHRLQRSTSKQPAEDSHQRE
AQPVAAKECMALVLKVDSDKREWDTPLATTAILEVELPPLPTDKVRRTSLDAQRSGSGPP
SEDTQTESSLMGSTISLCLLGPNASTKEAPRLKDKSALANMGFNNELARTRHRFSFDGGD
YSIFQSHSYPRRARTRRHKSTNQLNVESSPLANRRVTFSSTEWMLESTV
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggagcggctggttgtgtgtgtgctgctgtgtgtacttctatgtgcggtgctggtgaag
ggctacaactgccccggccgctgcatctgccagcacctctcccccactctgactctgctc
tgtgccaagaccggtctgctgtttgtgcccccaaccatcgaccgcaagaccgtggagctg
cgcctcacagacaacttcatcaccatcatccgcaggaaagactttttcaacatgaccagc
ctggtccacctcaccctgtcccgtaacaccatcagccagatcacgccccatgccttcctg
ggactgcgctccctacgagccctccacatggacggcaaccgcctcagtgtcatcaagagc
gaccacttcaaaggcttggtcaacctccgccacctcatactggggaacaaccagatccac
cacgtggcccctacctcttttgatgagtttgtgtcgaccatcgaggacctggatctgtcc
aacaacaacctgaggaccctgccctgggaggagataggcaggatgagccacatcaacatc
ctcacgcttgatcacaacctgatcgatcacatcggagctgggactttcacgctcctcacc
aagctggttcgtctggatatgacctccaaccggctgcagaagctacctccagacagcctg
tttcagcacgcccaggtgctgtcagacgccaagggctccaacccgtcttccctggcagtg
agcttcggagggaaccctctccactgtaactgtgagctgctgtggctccgcagactgaca
cgacacgacgacctggagacatgcgcctccccggagcacctcatggacaagtacttctgg
tccatccaggaggaggagttcatctgcgagcccccgctcatcaccaagaacctatccacc
aagccctacgtcatggagggccagggggtcaccctcaagtgcaaggccatgggagaccca
gacccggccatccactggcgcttcccagacggcaagctggtgcataacaactcccgcacc
atcctgtatgacaacggtaccttggacatcctcatcaccaccctaaaggacagcggtgcc
ttcaactgtgtggcctccaatgctgcaggcatcgccacagctgccgtggagatcaacatg
atccctctgcccctgttcgtaaacaacacattgcatcacatgcgcgaggctgatcggggc
ctctctgacatcaccacctcctccaagtcaggcaacgacaccaagggccatgacaagcac
caggacaggagggtggtggtggtcgagttgacctcctcctcggctgtgattcggtggccc
tccgagcgccacatcccaggcatcaggatgtaccagattcagtacaacagcactgcagac
gacacactggtttacagaatgatcccgtccaccagtaagaccttcctgatcaacgacctg
gcggcgggccgggagtatgacctgtgtgtcctggcggtgtacgacgacggcatcacctct
ctgacggccacgcgcgtggtcggctgcgtccagttccacacagccagcgaggtcagccag
tgtcgcttcatccacagccagtttctgggcggcaccatgataatcatcattggcggcatc
atcgtggcttcagtgctggtgtttatcatcatcctcatgatccgctacaaagcccacagc
agccccgaggacagcaaggtcaaggtcagctccagcatgcactcccagaccaacggcagc
cagcacagactccagcgctccacctccaaacagcctgccgaggacagccaccagagagaa
gcgcaaccggtggcagccaaagagtgcatggccctggtgctgaaggtcgacagtgacaag
agggagtgggacactcctctggccaccacggccatcctggaagtggagctgccccccctg
cccacggacaaggtgaggaggaccagcctggacgcccagcgctctggatctggccccccg
tcagaggacacacagacagaaagcagcttgatgggctccaccatatccttgtgtctccta
ggtcccaacgccagcaccaaggaggcccccaggctcaaggacaagagcgccctggccaac
atgggatttaataatgagctggcacgaactaggcacaggttcagctttgacgggggagac
tactccatatttcagagccacagttacccccgcagagcgcggacgaggcggcacaagtcc
accaaccagctcaacgtggagtcctcaccgctcgctaaccggagagtcactttcagcagc
actgaatggatgctggagagcacagtgtaa
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