Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385716
Help
Entry
139385716 CDS
T10872
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139385716
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Cadherin related
139385716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_pro
Fibulin_C
Cadherin_4
LapA_dom
CADH_Y-type_LIR
He_PIG
Motif
Other DBs
NCBI-GeneID:
139385716
NCBI-ProteinID:
XP_070987098
LinkDB
All DBs
Position
27:complement(16935751..17103885)
Genome browser
AA seq
3310 aa
AA seq
DB search
MKTEAKGLGWSVSRSLQDEGRWSRGVLLLAYIVLELITVHSSTVLGNLELQLDEEQPAGT
IVGDISAGLPPGVTASLYFISDHEGTGVGSDLDIDESTGIIKTAKVLDHELRDRYNFIAV
TMTGLTIEVTITVNDINDHAPTFPRRRAAFKIPEMTTVGTRFPLEPAVDGDKGQLTTQGY
LIKDGNPGQAFLLETRRGSNQVLYLDLVVNTLLDSETRPSYTLSLEAFDGGFPKRTGQMV
LDVMVQDINDNAPVFNQSRYHAIISENLQPGSNILQVFASDADQGDNGLVLYEINRRQSD
PEHYFIIDSRMGVITLNKPLDFEMRRVHELVVQARDNATQPEVTNAFVTIHVRDYNDNQP
TMTIIFLSEDGSPQISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDNI
IYLMCVDQILDREERDTYELRVMATDAGTPPLRAESSFTIQVTDVNDNPPLFDQQEYRQA
IPEVVFPGSFVLQVTARDNDQGPNGDITYSLLQDGQAGQDENQAQWFTIDPVTGIITTLS
QLDYESQPRPSVTVVATDGGRPSLSSTALVHVVLQDINDNEPVFGSNFYNVSIKENTAAG
SCILQVTATDADGGSFGSISYSLGSGINSAVPSQFSVGKETGQICTNVALDRDQGPTSYD
FTVTAVDGGGLNSMAYVRVDLLDINDNRPVFYPVSYAVSLSSQSAPGTSVIKVTALDPDT
GENGRVTYRTVPGGNSPFFTLNKDTGVISLSRSLHGKANTVIPMVVSAQDGGGLAALVNA
RVNISVVAGLVAPPVFEHSQYSFTVSEDVLRGTEVGIVQAISKNGVLSKDILYSISSGDP
AGYFTVDPESGALRTSLPLDHEAQPSLTLELQARSGSPPAFGQTHVHITIQDINDNTPVF
LPSSSESLLLPEHTKMGTMVYRVQAQDRDSGINGQVTFDLSSTATSSGGQRTFSMERSTG
EIRLVGELSYDVMPRYDLTVTAKDGGAPQLSSTMMLVVHVQAENDHGPVFDTLTYRVELR
ENTPLSTCFLQVRALSRDTAGSGSSSPLAFHLRPDGDAAGFGIAVDSGWLFVKSALDREV
KDMYMLMVLATAGHGQLKKTGSATVRVSVTDENDNSPRLIQARAFLAVRENLPAGSGFGR
VLATDRDTGLNGRLSYRLLHPDRHFQINSHTGEISTRVGLDREQQSSYQVLLVVQDGGTP
PRSATGTAFITVLDENDNTPSFRHSRPGRGLTMQVMEGQASGLLLGKVQANDPDEGENGT
VYYSMSGPRAERFSLNPTTGELRSSSPLSRSDRAEYSFTVTATDRGQPSHSATCTLHIQV
QSASRAPSKANSPFMSFNSVEEAKPGSMIGSVRSHDGFDLPEAGQVTYTVVGGSDRDGTF
MVDRQTGDVYLARELDYERSTRYTLQIEVDDFSMTLPSSHLVQLDIEVEDSNEHAPRFPE
DPVTVVIPENMEPGASIYTFQASDQDGSGPNSLLTYSILHQYPDLTDLLVLDPSTGVLTL
AQELDHEVTSSLILVVQATDSALNASQRRWGSVTVRVFVTDENDNAPVFSSPSAVSVMED
QPVGFVVLYVVARDADQGENGRVSYFIETGNAGGTFSLNPNTGSLSILKAIDREDQDLLN
LTIVAQDHGVPALSSSQLLSVQVIDVNDQVPWFQENQYQAQITENQPAGTTVLVVSASDL
DQGTNGQVTYGGISDEGFSIHPATGVITTTKALDREAQEQYTLTVYARDGGVPPNFARAA
VKIQVLDENDNAPAFSRLYYSLEVPENMEAVELFTLRAIDLDTGDSGEMTYKITTGDPSG
DFRVDRKSGVLSTSRPLDREHRARYSLTVTALDGGSPALSSTATVEVTLLDVNDHSPQFT
SPSYTTDLSEDVPIGSLVLEVSATDLDQGSNSQVLYFLSRGSQGMFIIDQHTGHVITAAP
LDRERTALYTFDVCAIDSSPASPRNSTATVTVYVQDVNDNAPFFIQDPLVINISASSVSS
HRVLSTMRAEDQDFGANGSLFYRFASPVRGFTINSLTGDIQATEKLQGLIQGQRTLIVEA
MDQGSPAQSSLGVVVIYIREQTYRGIRFSRHARDVSLQENAAKGTAVVQTQAQYPDGSRS
GISYSIFSGNTLHSFGISSSTGEIWVQSSMGLDYEETPRLRLVVKAETASSSSFMAVNLI
LQDVNDNLPRFQLQNYVAYIREAQGYNFPIIQVVADDLDQGQNGQVTYSLRSSSLSGLFK
IDPLTGSITTAAIMDREIWTQTKLVVTATDRGTPRLAGSATLTVIIVDLNDNSPTIPLPR
EIRVPENTLIGSVITQVTGNDVDSGPALSYTLHLDPSSQGVFGIHRYGGGVSLTAPLDYE
ERTWYTLTVRATDSKHQTEANLTILVEDVNDNVPTFTQDLYQVILAEHTPAGSAVVTVTA
TDSDSGENGRVMYRVMSSTRDIFYIDPSNGTLFITQQAEFDSENPSILVVIESRDMGTPA
LSSTATVQVQVTDVNDNAPVFHQSEYRATVSEDGLPGATILTLEAADSDTSRDNCGFDFT
IASGNAGNAFQIESSVRFLEGRGFQTVGSLVLTGEGLDFEAVSSYNLTVVVSDRGVPQRS
SAVSALISVTDTNDNPPAFSRAEYSVVVSEGTTTGTEVLSLSATDPDSPAVGKVQYLISS
GDETGMFQVDRWTGALKLQRPLDSERQASHVIIVQATDGQGHYALAPVTVEVKDINDNRP
YFPLPILTASVRENQPHNTLVTMLHAIDQDTGVFGQLRYYMLDKTGEGKDSFLLNQTSGE
VRTRSTFDFEKVNLFNFVALAMDAGNYSATVTIQVYVMGEDEYDPVFSDLEFSFLVPEGA
KKGQSIGQVTARDEDEGVDGIVLYSLADPSPYFQVNASTGVVSLKMDSHVRHLSRAKREV
RVMTLDLTAHSPLETSRVATARLTVDVTNTSFGLVSDMNLLLVSVIAVSLGAILILIFIA
MSLFCVRLRRQRKEQQSRCRPPASPGHGTMLHKLEETKVTDTDRNDRIYHQALPGYVSDQ
TGSGGGGPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVSSISSSMQEHISARGPD
SGIQQDADQLSDISCEPNIDANQWFKAKKLANLSGTLLAGQVPVYREDGGGYLGVGRGLN
ISHPKDYAFPVDGKPAVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFTEIARL
KDETATPNPRRPLQHKAKVDPKPPRIDPPPLITSIAHPGAKTVPVKPAPVKPSVGRSSFP
HLASLRRSPISHEGSPSSVAMSPSFSPSLSPLAARSPAIIPFGVTQGPSASMISTTEHSM
EHIEEAEMRI
NT seq
9933 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccgaggccaagggtttggggtggtctgtgtcgaggtcgctgcaggatgagggc
cggtggagccgaggggtcctgctgctggcctacatcgtcctggagctgatcactgtccac
tcctccaccgtcctggggaacctggagctccagctggacgaggaacagccagccgggacc
atcgtaggggacatcagtgctgggttaccgcctggcgtcaccgcaagtctttacttcata
tcagaccatgagggcaccggggtggggagtgacctggacatagatgagagcacgggcatc
atcaagacagccaaggtgttggaccatgagctgagggaccggtacaacttcattgccgtg
actatgacaggcttgaccattgaagtgacaatcacggtgaatgacatcaatgaccatgct
cccacgttcccccggaggagagcggcgttcaagatcccggagatgacgacagtgggaacc
aggttccccctagagccggcggtggatggggacaagggccaactgactacccagggatac
ctcatcaaagacgggaaccccggccaggctttcctcttggagacccggagaggatcaaac
caggttctctatctggatctggtggtcaacactcttctggacagtgagaccagaccgtct
tatactttatccttggaggcgttcgatggaggcttccctaagaggactggtcagatggtg
ctagatgtgatggttcaggatatcaacgacaacgctccagtcttcaaccagagtcgctac
cacgccattatctcagagaatctgcagccgggtagcaacattctccaagtctttgcctct
gacgctgaccagggagacaacggccttgttctctatgagatcaaccgcaggcagagcgac
ccagagcactacttcataatcgactcgcgaatgggtgtcatcacgctcaacaagccgctg
gactttgagatgcggagggtccacgagcttgtggtccaggcaagggataacgccacgcag
cccgaggttaccaacgccttcgtcacaatccacgtccgggactacaatgacaaccagccc
accatgaccatcatcttcctcagcgaagacggttccccacagatctctgagggtgcccag
cctggccagtacgtcgcacgcatctccgtcaccgacccggactacggagaatacgccaat
gtcaacgtctccttggaaggaggggatgggaagtttgccctgaccaccaaggacaacata
atctacctgatgtgtgtggaccagatcctggaccgagaggagagggacacatacgaactc
agggtgatggctacagacgcaggcacccctcctctcagggctgagtcctcctttacgata
caagtcactgacgttaacgacaaccctcctctgtttgatcagcaggagtacaggcaggca
atacctgaggtggtgttcccagggagcttcgtgttgcaggtcacggcgagagacaatgac
caggggcccaatggagacatcacatacagcctcctccaggatggccaggccggccaggat
gagaaccaggcccagtggttcaccatcgacccagtaacagggatcatcaccacgctctct
cagctggattatgagtcgcagcccaggccaagtgtgactgtggtggctacagacggaggg
aggccttccctgtcctccacagctctggtccatgtggtactacaagatattaacgacaac
gaacctgtgttcggtagcaacttctacaacgtatccatcaaggagaacacggctgctggg
tcctgcatcctacaggtgacagcgacagacgcggacggcggctccttcggctccatcagt
tactctctggggtcaggtatcaacagtgctgtcccctcccagttctctgtagggaaggag
acaggacagatctgtaccaacgtggctctggacagggatcagggaccaaccagctatgac
tttaccgtcaccgccgtggacgggggcggtctgaattccatggcctatgtcagggttgac
ctgctggacatcaacgacaacagaccagtcttctaccctgtgagctacgccgtcagcctc
agctcccagagtgcacctggcacctctgtcatcaaggttacggcccttgaccccgacact
ggggagaatgggagggtcacgtaccgaaccgtccccgggggcaactcccccttcttcacc
ctcaacaaagacacaggtgtgatctccctgtcccggtcgctgcacggcaaggccaacacg
gtgatccccatggtggtttcagcccaggacggagggggtctggcagcactggtcaacgcc
cgggtcaacatcagtgtggtggcaggcctggtggcgccccctgtgttcgaacacagccag
tacagcttcactgtgtctgaagacgtactgcgtgggactgaggttggcatcgtacaggcc
atcagtaagaacggcgtcctcagtaaggacatcctgtacagcatctcctctggagaccct
gctggctacttcaccgtggacccagagagcggagccctgcggaccagccttcctctggac
cacgaggcccagccttctctaaccctggagctccaggctcgtagcggcagcccccctgcc
ttcggtcagacccacgtccacatcacaatccaggacatcaacgacaacactcctgtcttc
ctgccctcctcttctgagtctctcctcctcccggagcacacaaagatggggaccatggtc
taccgcgtccaggcccaagaccgggactccggtatcaatggccaggtgacctttgacctt
tcctccaccgcaacctcaagcggaggtcaaagaaccttttccatggagcgcagtacaggg
gagatccggctggtcggcgagctgtcgtacgacgtaatgccgcgctatgacctgacggtg
acagctaaagatggtggcgctccccagctgagctctaccatgatgcttgtggtgcacgtc
caggcggagaacgaccacggtcccgtgttcgacaccctgacctatcgcgtggagctgagg
gagaacaccccgctcagcacatgtttcctacaggtgcgagctctgagccgggacaccgcg
ggttcagggtcctcctctccactggcattccacctgagacctgacggagacgcagcaggt
tttggcatcgcagtagacagcgggtggctgtttgtgaagagtgctctggacagagaggtg
aaggacatgtacatgttgatggttctggccacggcaggccacgggcagctgaagaagacg
ggcagtgccacagtgagggtgtcggtgaccgatgagaacgacaactctccccgtctgatc
caggcgagggctttcctggctgtgagagagaaccttccggcgggttcagggttcggacgg
gtgttggctacggaccgagacacgggcctcaacggcaggctcagttacagacttctacac
ccagacagacacttccagatcaactcacacacaggtgagatcagtacccgtgtaggtctg
gacagggagcagcagagtagttaccaggtgttgttggtggtccaggatggaggtactccc
ccgcgcagcgctacagggacagccttcatcaccgtcctggatgagaacgacaacaccccc
tccttcagacacagccggcctggcagaggactgaccatgcaggtgatggagggccaggca
tcaggtctactgctggggaaagtacaggccaatgaccctgatgagggagagaacggcact
gtgtactactccatgtcaggtcccagagcagagcgtttctctctgaacccgactacaggt
gaactgcgttcctcctctcctctgagtcgctccgacagagctgagtacagcttcactgtg
accgccactgaccgaggccagccatctcacagcgctacctgtacactacacatacaggtc
cagagtgcgagcagagctccttccaaagccaactcccccttcatgtcctttaactctgtc
gaggaggccaaaccaggctctatgattggctctgtgaggtcacatgatggctttgatctc
cctgaggccggtcaggtgacctacacggtggtgggcgggtcagaccgagacggaacgttc
atggtggaccgtcagacaggtgacgtgtacctggcgagggagctggattatgagcgctcc
acccgctacacactacagatagaggtggacgacttctccatgacgttacccagcagccac
ctggtgcagctagacatcgaggtggaggacagcaacgagcatgcaccccgcttcccggag
gaccccgttaccgtggtgatacctgagaatatggagcctggggcgtccatctacaccttc
caggcctcggatcaggatggatcagggcccaacagcctgctgacctactccatcctgcac
cagtaccctgacctcactgacctcctggtgcttgacccttccactggcgtcctgaccctg
gcacaggaactggaccatgaggtcacttcctcccttatcctggtcgtccaggcaacagac
tccgccctgaatgccagccaacggcgctggggctcggtgacggtgagggtgtttgtgaca
gatgagaatgacaacgctccagtgttcagctcgccatccgcggttagcgtcatggaggac
cagcctgtgggtttcgtggttctctacgttgtggcgcgagatgccgaccagggggagaac
ggacgggtcagctacttcatcgagactggcaacgctggagggacattcagcctcaaccct
aatactggttctctgtctatcctgaaggccatcgaccgggaggatcaggacctgttgaac
ctgaccatcgtagcccaggaccacggggtaccagcactctcatccagccagctgctgtct
gtccaggtcatcgacgtgaacgaccaggtgccctggttccaggagaaccagtaccaagcc
cagattacagagaaccagcctgcaggaaccactgttctggtagtgtcggcctccgacctg
gaccaaggtaccaacggccaggtgacatatggaggcatctctgacgagggttttagcatc
cacccagctacaggtgttataaccaccactaaagccctggacagagaggcacaggaacaa
tacacactgacagtgtatgcccgagacggtggcgtgcctcctaactttgcccgggcggca
gtgaagatccaggtgttggatgagaatgacaacgccccagcattcagtagactgtactac
agtctggaggtgcctgagaacatggaggctgttgagcttttcaccctcagagctattgac
ctggacactggggacagcggagagatgacctacaagatcacaacgggcgacccgtcaggt
gacttccgtgtggacaggaagtcaggtgttctctccacctccagaccgctggacagggaa
catagggccaggtacagtctgacagtgacagcccttgacgggggctctccggccctgagc
agcacggccacagtagaggtcactctcctggacgtcaacgaccacagcccccagttcacc
agccccagctacaccactgacctctctgaggatgttcctattggctccctggtgctggag
gtctctgctactgacctggaccaagggtctaacagccaggtgctgtacttcctgtcgcgt
ggctcccagggcatgttcatcatcgaccagcacacgggacatgtcatcaccgccgctccg
ctcgaccgagaacgaaccgcgttgtacactttcgatgtctgcgccatagactcgtccccc
gccagccctcgcaactccaccgccacggtcaccgtgtatgtacaggacgtgaacgacaac
gctccattcttcatccaggaccccctcgtcatcaacatttcagcctccagtgtctcctcc
catcgcgtcctgtccaccatgcgggcggaggaccaggattttggggccaacggctcactg
ttctaccgcttcgccagccctgtccggggcttcaccatcaactctctgaccggggacatc
caggctacagagaagctgcagggactgatccagggccagaggactctgattgtagaggct
atggaccagggaagcccagctcagtcctctctaggggtggtggtcatctacatcagagaa
cagacctacagggggatccgcttctcacgtcacgctagagacgtcagcctgcaggagaac
gccgccaaaggtaccgctgtggtgcagactcaggcgcagtaccctgatggatcccgtagt
gggatcagttacagcatcttcagcggtaacaccctacactcctttggaatcagctcctcc
actggtgagatctgggtacagagctccatggggctggactatgaggagacccctagactc
cgcctagtggtgaaggcagaaactgcatcctccagttccttcatggcggtcaacctgatc
cttcaggacgtcaatgacaacctgccacgcttccagctgcagaactatgtagcctacata
cgagaggcacagggatataatttccctatcatacaggtggtggctgatgacctggaccag
ggccagaatggtcaggtgacctacagcctgaggtcgtcgtctctcagcggtctgttcaag
atcgacccgctgaccggaagcatcaccaccgctgctatcatggaccgagagatctggaca
caaaccaagctggttgttactgcaacggaccggggcacaccacgattggccggctcggcg
accctcacggtgataatcgtggacctcaatgacaacagtcctacaatccccttgccgcgc
gagatcagagtgccagagaacactctgattggctcggtaataacccaggtgactggaaac
gacgttgactcaggcccagccctgtcctacaccctccacctggacccgtcctcccagggc
gtgtttgggatccaccgctacgggggcggggtgtctctgaccgcccctctggactacgag
gagaggacttggtacacgctgactgtcagggctactgactccaaacaccagactgaagct
aacctcaccatactggtggaggatgtcaatgataacgttcctacattcacacaggatctt
taccaggtgattctggcagagcacaccccagctggaagtgcagttgtcactgtgacagcc
acggacagcgactctggagagaacggccgtgtcatgtacagagtgatgtcatcaacccgg
gacatcttctacatcgaccccagcaatggtaccctgttcatcacccagcaggcagagttt
gactctgagaacccttctatcctggtggtaatagagtccagagacatgggaacaccagcc
ctctcctccaccgctactgtacaggtccaggtgactgacgtcaacgacaacgcccccgtc
ttccaccaatcagagtacagagccacggtgtcggaggacggcctcccgggcgccaccatc
ctgaccctggaggcggccgacagtgacacgtcacgcgacaactgtggctttgacttcact
atagccagcggaaacgcaggcaatgccttccagattgagagcagtgtacgcttcctagaa
ggacggggcttccagacagtaggcagcctggtattgaccggtgaggggctggactttgag
gcggtgtccagttacaacctgaccgtggtcgtgtcagaccgcggcgtgccccagaggagc
tcggctgtctctgcgctgatcagtgtgacggatactaacgacaaccctccggcgttcagc
agggcagagtacagtgtggtggtgagtgaaggaacaaccacagggactgaggtcctcagc
ctgtctgcaacagacccagactccccggccgtagggaaggtgcagtacctgatcagctct
ggggatgagacgggtatgttccaggtagaccgctggaccggagccctgaagctgcagaga
ccactggacagcgagagacaggcatcccatgtgatcattgtgcaggcaacagatggacag
ggtcactatgcgctggctcctgtcactgtggaggtgaaggacattaatgacaacagacct
tacttccctctgcccatcctcaccgccagcgtcagagagaaccagcctcacaacaccctt
gtcaccatgctgcacgccatcgaccaggacacgggagtcttcggacagctgaggtactac
atgttggacaagactggagaggggaaagactccttcctgctcaaccagacgtcaggcgag
gtccggactcgctctacctttgactttgagaaggtcaacttgttcaactttgtagctcta
gccatggacgcagggaactactctgccacggtgaccatccaggtgtacgtgatgggggag
gatgagtacgaccctgtgttctccgacttagagttctccttcctggttcctgagggggcg
aagaagggccagagcatcggtcaggtgacagccagagacgaggacgagggagtggacggg
attgttctgtactccctagctgacccctcgccctacttccaggtcaatgcatcgacaggt
gtggtctccctgaagatggacagccacgttcgacacttgagcagggccaagagggaggtc
cgtgtgatgacccttgacctgacggcccacagccctctggagacgtcccgcgtggccacc
gcccgcctcactgttgacgtgacaaacacatccttcggcctcgtgtcggacatgaacctg
ctgctggtcagtgtgatcgctgtgtccctgggagccatcctcatcctcatcttcatcgcc
atgtctctgttttgtgtgagactgagacgtcagaggaaggagcagcagagtcgctgcaga
cctccagcctctcccggccacggcaccatgctacacaaactagaggagactaaagttacc
gacactgaccggaacgaccgcatctaccatcaggccttaccagggtacgtttccgaccaa
acagggagtggagggggagggccatacccccgcgggggctccctggacccatcccactcc
agcgggcgtggctcagcggaagcggcggaggacgatgagatccggatgatcaacgagtac
ccccgtgtctcctccatctcttcatccatgcaagaacacatctcagcccgcgggccagac
tctggtatccagcaggacgctgaccagctctctgacatctcgtgtgagcccaacattgac
gccaaccagtggtttaaggccaagaagctggccaatctcagtgggactctgctggctggg
caggtgcctgtctacagggaggatggaggaggatatctgggggtagggagggggctgaac
atctcccaccctaaagactatgccttcccagtggatggtaaacccgctgtggatggctcc
ctcacagccatagtggccagtgacgaggagctgaggggtagttataactgggactacctg
ctgaactggtgtccacagttccagccattagcaagcgtcttcacggagatagcgaggtta
aaggatgagacggccactcctaaccctcgcagaccgctccagcacaaagccaaggtggac
cccaaaccccctcgcattgaccccccgcccctaatcacctccatagcccaccccggcgcg
aagacagtcccggtcaagcctgctcctgtcaagccctctgtggggaggtcctccttcccc
cacctggcctccctacggaggtcccccatcagtcacgagggctccccctcctcagtagcc
atgtcccccagcttttccccctccctgtcccccctggccgcccgctccccggccatcata
cccttcggggtcacccagggcccctcagcctccatgatcagcaccactgaacacagcatg
gagcacattgaagaggccgagatgaggatatag
DBGET
integrated database retrieval system
