Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385850
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Entry
139385850 CDS
T10872
Name
(RefSeq) interferon regulatory factor 2-binding protein 1-like
KO
K22383
interferon regulatory factor 2-binding protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139385850
04121 Ubiquitin system [BR:
ocla04121
]
139385850
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
139385850
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Atypical E3
139385850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-2BP1_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
139385850
NCBI-ProteinID:
XP_070987215
LinkDB
All DBs
Position
27:complement(8190044..8225703)
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AA seq
623 aa
AA seq
DB search
MSSPQSYSRRQWCCYLCDLPKMPWAMIWDFSETVCRGCVNYEGTDRIEFLIETARQLKIT
HVMQDDRSPCPQPAKHGPGGRDGPMEGGRPLPERFERGRGDYGAPARIPNGLHRIDDRGP
QQELSGQSPNNARRPMGGTVPPNLMTQGLVGAPHGLLAAVPGLNARVGGAPLALSAPMLN
EITKRQLSMGMGVASFLSPEFEKELREKQRNAEALAELSESVRNRADDWAGRPKAVRGAL
LTLSGCTPFNVRFKKDHSLVGRIFAFDAKLTLDFELKIFAEYPCGSGNMFSSLAALVKQM
FHDSQRDSGSKMVNSGLKYVEYEKRHGAGDWRLLSELLSDAVRAFKDTPGPDVLPQPYLD
ASCSMLPTALCHMSRSAPPVRGRRRKASPEPQGGEVVTTEEQLRQHWPMGMYPGMAIHLA
ASSFPSVSQPPPHQEGSASHSHSSDPSPITALMSVAESPREAPSSSSSGGGLGHSSLAVR
QSSSSPMAACPAGQQRRLASRNGEPQGASNSAGGTTAALPLAGASDQGALDPSGSSGPPL
CCTICHERLEDTHFVQCPSVAAHKFCFPCTRDFIRSQGAGSEVFCPSGERCPLVGSNVPW
AFMQGEIATILAGDVKVKKERDP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccccccagtcatattcaaggcggcagtggtgttgttacctttgcgatttgcct
aagatgccatgggctatgatctgggactttagcgagactgtctgccgaggctgtgtgaat
tatgaaggtacggaccgtattgaatttctcatagagacggcaaggcagttgaaaataact
catgttatgcaggatgacaggtccccgtgtccccaacccgctaaacatggcccaggtggg
agagatggacctatggagggtggcaggccacttcctgaacgctttgaaaggggaagaggg
gactacggagccccagcacggattcccaacggtctgcacagaatagatgacaggggccca
caacaagaactcagtggacagagccctaacaacgccagaagacccatggggggtaccgtt
ccgcccaatttaatgacacaaggccttgtgggggctccacacggattgctagcagctgtg
cctggtttaaatgccagagtcgggggagcccccctcgccctctctgcccccatgctgaac
gagatcaccaagaggcagctgagcatgggcatgggtgtggcctccttcctgagccctgag
tttgagaaggagctgagggagaagcagaggaacgcagaggctctggccgagctgtcggag
agtgtacggaaccgagcagacgactgggccggccgacccaaggctgtacgaggggccctg
ctcaccctctccggctgcacccccttcaacgtacgcttcaagaaggaccacagcctggtg
ggacggatctttgccttcgacgccaagctgacgctggactttgagctgaagatctttgca
gagtacccgtgcggctcggggaacatgttctccagcctggcagcgctggtcaagcagatg
ttccacgacagccagagagactctgggagcaagatggtcaactcgggcctgaagtatgtg
gagtacgagaaaaggcatggcgcgggggactggcgactgctctctgagctgctgagtgat
gcggtacgggcctttaaggacacccccggccctgacgttctcccccagccctacctggac
gccagctgctccatgctgcccactgcgctgtgtcacatgtcccgctcggcaccgccagtc
cgcgggcgccggaggaaggcttccccagagccccagggtggagaggtagtgaccacagag
gagcagctccggcagcactggcccatggggatgtacccgggaatggctatccacctagct
gcctcctccttccccagcgttagccagccacctccccaccaggagggctcggcctcccat
tcccacagcagcgacccctcccccatcacagcactgatgagcgtggctgagtcacccaga
gaggcccctagcagcagcagtagtggtggaggcctgggccactcctccttggcagtgagg
cagagcagcagcagccccatggcggcctgccctgcggggcagcagcggcgcctggcctcc
aggaatggggaacctcagggagccagcaactctgcagggggcaccacagcagctctccct
ctggctggggcctcggaccagggagcattggacccctccggctcctctggtccccctctc
tgctgcaccatctgccacgagcgcttggaagacactcattttgtccagtgcccctcggtt
gcggcccataagttctgcttcccttgcaccagagacttcatccggagccagggggccggc
agcgaggtgttctgccccagtggagagcggtgtcccctggtgggctccaacgtgccctgg
gccttcatgcagggagagatcgctaccatcctggctggagatgtcaaggtgaagaaggag
cgcgacccctaa
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