Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385953
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Entry
139385953 CDS
T10872
Name
(RefSeq) U1 small nuclear ribonucleoprotein A
KO
K11091
U1 small nuclear ribonucleoprotein A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139385953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139385953
Spliceosome [BR:
ocla03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
139385953
Complex B
139385953
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
DUF4523
RRM_MUD2_C
xRRM
Motif
Other DBs
NCBI-GeneID:
139385953
NCBI-ProteinID:
XP_070987368
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All DBs
Position
27:4697309..4700200
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AA seq
281 aa
AA seq
DB search
MAAPDMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARSLKMRGQAFVIFK
EVNSASNALRSMQGFPFYDKPMRIGYAKGDSDIIAKMKGTYVERDRKKEKRAKVKGPEAA
GAKKGVPGTPVVPMGPGVPTPMPGMPPMSGAPRMMPMPGQPPYMPPPGMMPPPGMGPGGM
LPGAMPPGGMMPGQMPHAQVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP
GRHDIAFVEFDNDVQAGAAREALQGFKITQTNAMKISFAKK
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccggatatgcgcctcaaccacaccatatacatcaacaacctgaacgagaag
attaaaaaagatgaactgaagaagtcgttgtacgcaatcttctctcagtttggtcaaatc
ctggacattttggttgcccgctccctgaagatgaggggtcaggcttttgtcatcttcaag
gaggtcaacagcgcctccaatgcccttcgttcgatgcaggggttcccattctatgacaaa
cctatgcgtattgggtacgccaagggggactctgacatcatcgctaaaatgaagggcacc
tatgtggagcgtgaccgtaagaaggagaagagggccaaggtcaagggcccagaggctgca
ggggccaaaaagggtgtgccagggacccctgtagtacccatgggccctggagttccaaca
cccatgcccggaatgccacccatgagcggagctcctcgtatgatgccaatgccagggcag
cccccctacatgcccccaccaggcatgatgcctcctccagggatgggccctggggggatg
ctccctggtgccatgcctccgggtgggatgatgcccgggcaaatgccccacgcccaggtt
gcagaaaaccctcccaaccacatccttttcctcaccaacctcccagaggagaccaacgag
ctcatgctgtctatgctcttcaaccagttccctgggttcaaagaggtgcgtctggtgcct
ggtcgccacgacatcgcctttgtggagtttgataatgacgtgcaggctggagcggccagg
gaggcactacagggcttcaagatcacccagaccaacgccatgaagatctcattcgccaag
aaataa
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