Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385988
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Entry
139385988 CDS
T10872
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139385988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139385988
03012 Translation factors [BR:
ocla03012
]
139385988
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139385988
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139385988
Translation factors [BR:
ocla03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139385988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
AAA_16
NPHP3_N
DUF7428
Motif
Other DBs
NCBI-GeneID:
139385988
NCBI-ProteinID:
XP_070987405
LinkDB
All DBs
Position
27:40338914..40397740
Genome browser
AA seq
1078 aa
AA seq
DB search
MSYGGYGGRGGRRGGRRGGRGFGRDGSRERWDRLAGSSGGGHPRSTETESREDRGERGGR
GGGPNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGP
TCPAREAHPSTSEHWRSTPSAPDRGGHCYFDGDEPSQDVLKIDLKQEKKEVEERPVQNTP
LTSQRYFPQDVLKAEPQEEREEKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKKADS
KYLDMLKFREKLPSFGKKEELVELIRSSQVLVVSGETGCGKTTQVTQFILDDYIERGMGS
VCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTTGII
LQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAEKFS
KYFNNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQKKEQRPRWKRGFMQGQNSRPEKDQK
EAEYKESWPCYARTLRDKYSDRTIDVLEMMDDDDKIDLELIVQLIRHIVLSQEEGAILVF
LPGWDNISGLNDLLMAQQMFKSDRFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIATNIA
ETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGKCYHL
YNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGPIAEFLRKALDPPTEEAVTLAITHL
MDLNALDRSEALTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIP
MGKEKMADFRRRTLSRESKSDHLTIIYAFTGWEEAKRRGYKFEREFCWDNFLSANTLQML
HNMKGQFAEHLLGAGFTSSKNPKDPESNTNSDNEKLIKAVIVAGLYPKVAMIKPSGSKKR
PVRVYTKTDGKVCIHPKSVNAEETQFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFGG
DVTIQMDQDQETIAVDDWIVFQSPARIAHLVKNLKKELDSLLEEKIRSPAPVDWSNRQSK
DCAVITAIIDLITTQERPDVNARNTEPRGRRQYHNNDDGGDEYENCCSSSQPREKLRP
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatggaggcagaggcggccgacgaggtggccgaagaggaggtcga
ggattcggacgggatgggagccgggagaggtgggaccgcctagctgggtctagtggtggt
ggacacccgcggagcaccgaaacggagtcgagggaggaccggggagaacgaggagggaga
ggtgggggaccaaaccgtccacccccgcatctaaagggcagggagatcggactgtggtac
gccaaatggggaggcttgaagaggaaagaaaatgagagaaaatcgcgggcagtggttcag
atggatgagtccagggaacagcatatcactaatctgctgaacactgtccagagaggaccg
acatgcccagccagggaggcccacccctccacatctgagcactggcgttcaaccccgtca
gcaccggacagaggcggccactgttactttgatggtgatgagccctctcaggatgtcctg
aaaattgatctcaaacaagagaagaaggaggttgaggagaggccagtacagaacactcca
ctcacatcacaacgttacttcccacaggatgtccttaaagctgaaccccaagaagagagg
gaggagaaggagaggagagggaaggataaagacctggagtacttgtttcaggaggtggtc
agggagaatgctctggaccagcagttaaagagagatctagagaggaagaaggcggactct
aaatacctagacatgctgaaattcagggaaaagcttccatcctttggaaaaaaagaggag
ttggtggagttgatcaggtccagccaggtgctggtggtcagtggagagacggggtgtggt
aagaccacccaggtgacccagtttatcctggatgactacatagagaggggcatgggttca
gtctgcagggtggtctgcacccagccacgtcgcatcagtgccatatctgtagcggagcgg
gtggctgcggagagggctgagagtgtaggggacgggaactcatgtggttatcagatccgc
ctgcagagtcggttaccacggaaacagggctcggtgctgtattgtacaacgggtattatt
ctacagtggcttcgctcttcccctctgttgtccaccatcagccacctggttttggatgaa
attcacgagaggaaccttcactctgatgttctactcatcattgttaaagacctgctccga
gtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgagaagttctcc
aaatactttaataactgtcctatgatccacatcccggggatgaccttcccggtgcaagag
ttcctactggaggatgttttggagatgattaggtaccgtccccagaagaaggagcagagg
cccaggtggaagagaggtttcatgcagggtcagaattccagaccagagaaggaccagaaa
gaggccgagtacaaggagagctggccctgctacgcccgcacactacgagacaagtactct
gacagaaccatagatgtgttggagatgatggacgatgatgataagattgaccttgagctc
atcgtgcagctgatcagacatatcgtgctaagccaggaagaaggagccatcttggtgttc
ctgccaggttgggacaacatcagtggcctcaacgacctcctcatggctcagcagatgttc
aaatcagatcggtttgtgatcattcctctgcactccctgatgcctactgtcacccagacc
tcggtgttcaaaaggccccctccaggagtcaggaagattgtcattgccaccaatatcgct
gagaccagtattaccatagatgatgtggtgtttgtgatagatgggggaaagattaaggag
actcactttgacactcagaacaacatcagcactatgactgcagagtgggtcagcctggcc
aatgccaaacagagaagaggacgcgctggcagggtgtgtccagggaagtgttatcacctg
tataatggcctgagggccagtcttctggatgcctaccagctacctgagatcatgcgcaca
ccactggaggaactgtgtctgcagatcaagatcctcaagctgggtccaatagcagagttc
ctgaggaaagctctggatcctcccacagaggaggctgtcactctggccatcacacacctg
atggacctcaatgctctggaccgctcagaggctctgaccccgttagggttccacctggcc
aggctgcctgtagaacctcacatcgggaagctgatcctgtttggagctctgctgggctgt
ctggaccctgtcctcactatcgctgcctctctcagcttcaaggaccccttcttcatacca
atgggtaaggagaagatggcagactttaggagaagaactctgtccagagaatcaaagagt
gaccacctcaccatcatctatgccttcacaggctgggaggaagctaagcgacgcggctac
aagtttgaacgagagttctgctgggacaacttcctgtcagccaatacactccagatgctg
cacaacatgaagggtcagtttgccgagcacctgctgggggctggcttcaccagcagcaag
aacccaaaagaccctgaatctaacacaaactcagataatgagaagctgatcaaggcagtg
atagtggcaggtctctaccccaaagtggccatgatcaaacccagtggcagcaagaagaga
ccggtgagggtgtataccaaaaccgatgggaaggtgtgtattcaccccaagtcagtgaat
gctgaggagacccagtttaactacacatggctcatctatcacctcaagatgaggaccagc
agtatcttcctgtacgactgtacggaggtgtctccgttctccctgctgttctttggaggt
gacgtcaccatacagatggatcaggaccaggagaccatcgctgtggacgactggatcgtg
ttccagtccccggcacgcatcgctcacctcgtcaagaatctgaagaaggagctggactct
ctattggaagagaagatccgaagccccgcccctgtggactggagcaaccgccaatccaaa
gactgtgccgtcatcacagccatcatagacctcatcaccacccaggagagacccgacgtt
aacgcgaggaacactgagcctagaggacgccgccagtatcacaacaacgatgatggtggt
gacgagtacgagaactgctgcagctcttctcaacccagagaaaagctcaggccatag
DBGET
integrated database retrieval system
