Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385995
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Entry
139385995 CDS
T10872
Name
(RefSeq) serine/arginine-rich splicing factor 1B
KO
K12890
serine/arginine-rich splicing factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139385995
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139385995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139385995
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
SR proteins
139385995
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
139385995
NCBI-ProteinID:
XP_070987412
LinkDB
All DBs
Position
27:complement(20211394..20216204)
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AA seq
253 aa
AA seq
DB search
MSGGVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFIEF
EDPRDADDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGFGGGGGGVGGAPRGRYGPPSRR
SEYRVIVSGLPQSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNT
KFRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSRSRSRSAASRSRSNSRGGGTRGGRGSP
RYSPRHSRSRSRS
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaggcgtcgtgcgaggccctgcaggaaataacgattgtcgtatttacgtcgga
aatctaccccctgatattcgcaccaaagatgtcgaggacgtcttttacaaatacggagcg
attcgcgacatcgacttgaaaaatcggagaggaggacctccctttgcctttatcgaattt
gaagatcccagggatgccgacgatgcagtgtacggacgagacggctatgactacgacggt
tatcggctgcgagttgaattccctcggagcggcaggggtggggggagaggcggctttggt
ggtggtggtgggggggttggtggcgcccctagaggcagatacgggccgccatccagacgc
tcggagtacagggtcattgtctcagggcttccccagagtggcagctggcaggacctcaag
gatcacatgcgtgaggctggggatgtatgttatgctgacgttttcagagatggaactggg
gttgtggagtttgtgcgcaaagaagacatgacctacgccgttcgaaagctggataacacc
aaattccgatcacacgagggagagaccgcttacgttcgcgtgaaagtagatggtccccgc
agcccgagctatggaagatcacgttccaggagccgcagtcgaagcaggagccgcagcgca
gccagtcgcagccgcagcaactctcgcggtggtggtacccgtggtggcagaggatctcct
cgctactctccacgccatagccgctctcgctcccgttcctaa
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