Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386025
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Entry
139386025 CDS
T10872
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142
Lysosome
ocla04144
Endocytosis
ocla05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139386025
04142 Lysosome
139386025
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139386025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139386025
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139386025
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
139386025
Exosome [BR:
ocla04147
]
Exosomal proteins
Proteins found in most exosomes
139386025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
139386025
NCBI-ProteinID:
XP_070987508
LinkDB
All DBs
Position
27:complement(23396308..23422479)
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMMS
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFM
KTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
DASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQP
GFGYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagtaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagctgcaaaaaccctccagatcttcaacattgagatgaagagcaagatgaag
gctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgtagca
ctggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtcaaa
gtctttgacagacactccagtctagcaggctgtcaaatcatcaactaccgcactgacgcc
aaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtgggagcc
atgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgccggc
ttcgcccagttcaaaatggagggtaatacagaggaatcgacactgttctgcttcgctgtc
cgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggcaat
cagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgacttc
cctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagcggg
gagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaacagg
aaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcactaac
gtgctccagaacccagacctagccctgcgcatggccgtgcgcaacaacctggctggggcc
gaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgaggct
gccaaggtggccgcaaacgctcccaagggtatccttcgtaccccggacaccatccgtaag
ttccagagtgtgccggcccagccaggccagacctctccactcctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggaactgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgttca
gaggagctgggggacctggtgaaatcagtggaccccactctggctctcagcgtctacctc
agggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccagaaa
attgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctcaggaat
gtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggatgag
gagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatccag
cagtgtacctccttcctcctggatgccctgaagaacaacaggcctgctgaggggcctctg
cagacacgcctgctggagatgaacctggtccacgccccacaggtggctgatgccatcctg
ggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaggct
ggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggctgtg
gtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtcagtg
gaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctgcag
atctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcactgag
ctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgttaat
ttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgaccgc
ttcgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatacatt
gagatctatgtgcagaaggtgaatcccagccgtctgccggtggtgattggagggctgctg
gatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacagttc
tccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgcttctgcct
tggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttctac
gacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtggcc
tacgagagaggacagtgtgatcaggagctcattaatgtgtgcaatgagaactctctgttc
aagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtgctg
ctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctgtct
gagacacaggacccagaggaggtgtccgtcacagtcaaggcctttatgactgcagacctc
cccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagtgaa
cacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccgtacccgtgtg
atggagtacatcaaccgcctagacaactacgatgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacctcc
gccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgctgag
cgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggtctg
gtgaaggaggccatcgactcctacatcaaggctgatgacccctctgcctacatggaggtg
ggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatggcc
cgtaagaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaacag
gtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaacaac
gtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggccgcc
gtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcctgt
gtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccatgct
gatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgagctg
gccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcggag
ctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatgagc
cacccctcagatgcctggaaggagggacagttcaaagacattgtcaccaaggtggccaat
gtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactgaac
gacctgctcatagtgctgtcaccacgactggaccacacccgcgcagtcaacttcttcatg
aagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaacaac
aagggtgtcaacgaagcacttaacaacctcttcatcacagaagaagactatgcggccctg
cgtgcctccattgatgcctacgacaactttgacaacatcacccttgcccagggcctggag
aagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaaccgc
tggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcagtat
gcgtctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggaggag
gacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcctgac
gtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctatttcatc
caggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaagctt
gacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccattgtt
tatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccagcct
ggctatggaggctacggctacccagcagcacccaccggctacggccaacctccccagcct
ggctttggctatggcatgtga
DBGET
integrated database retrieval system
