Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386025
Help
Entry
139386025 CDS
T10872
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142
Lysosome
ocla04144
Endocytosis
ocla05100
Bacterial invasion of epithelial cells
Brite
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
139386025
Exosome [BR:
ocla04147
]
Exosomal proteins
Proteins found in most exosomes
139386025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139386025
NCBI-ProteinID:
XP_070987508
LinkDB
All DBs
Position
27:complement(23396308..23422479)
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMMS
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFM
KTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
DASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQP
GFGYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagtaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
ccaatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagctgcaaaaaccctccagatcttcaacattgagatgaagagcaagatgaag
gctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgtagca
ctggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtcaaa
gtctttgacagacactccagtctagcaggctgtcaaatcatcaactaccgcactgacgcc
aaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtgggagcc
atgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgccggc
ttcgcccagttcaaaatggagggtaatacagaggaatcgacactgttctgcttcgctgtc
cgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggcaat
cagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgacttc
cctgtagccatgcagatcagctctaagcaagatgttgtctttcttatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagcggg
gagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaacagg
aaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcactaac
gtgctccagaacccagacctagccctgcgcatggccgtgcgcaacaacctggctggggcc
gaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgaggct
gccaaggtggccgcaaacgctcccaagggtatccttcgtaccccggacaccatccgtaag
ttccagagtgtgccggcccagccaggccagacctctccactcctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggaactgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgttca
gaggagctgggggacctggtgaaatcagtggaccccactctggctctcagcgtctacctc
agggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccagaaa
attgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctcaggaat
gtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggatgag
gagcccctggccgacatcacacagatcgttgacgtgtttatggagtataacctgatccag
cagtgtacctccttcctcctggatgccctgaagaacaacaggcctgctgaggggcctctg
cagacacgcctgctggagatgaacctggtccacgccccacaggtggctgatgccatcctg
ggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaggct
ggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggctgtg
gtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtcagtg
gaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctgcag
atctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcactgag
ctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgttaat
ttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgaccgc
ttcgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatacatt
gagatctatgtgcagaaggtgaatcccagccgtctgccggtggtgattggagggctgctg
gatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacagttc
tccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgcttctgcct
tggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttctac
gacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtggcc
tacgagagaggacagtgtgatcaggagctcattaatgtgtgcaatgagaactctctgttc
aagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtgctg
ctggagagtaacccgtttagaagacccctcatcgaccaggttgttcagacggccctgtct
gagacacaggacccagaggaggtgtccgtcacagtcaaggcctttatgactgcagacctc
cccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagtgaa
cacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccgtacccgtgtg
atggagtacatcaaccgcctagacaactacgatgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacctcc
gccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgctgag
cgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggtctg
gtgaaggaggccatcgactcctacatcaaggctgatgacccctctgcctacatggaggtg
ggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatggcc
cgtaagaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaacag
gtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaacaac
gtgtccaacttcgggcggctagcgtccaccttggtccacctgggagagtaccaggccgcc
gtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcctgt
gtggatggaaatgagttccgcctggcacagatgtgtggcctgcatattgttgtccatgct
gatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgagctg
gccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcggag
ctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatgagc
cacccctcagatgcctggaaggagggacagttcaaagacattgtcaccaaggtggccaat
gtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactgaac
gacctgctcatagtgctgtcaccacgactggaccacacccgcgcagtcaacttcttcatg
aagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaacaac
aagggtgtcaacgaagcacttaacaacctcttcatcacagaagaagactatgcggccctg
cgtgcctccattgatgcctacgacaactttgacaacatcacccttgcccagggcctggag
aagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaaccgc
tggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcagtat
gcgtctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggaggag
gacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcctgac
gtggtgctggagacggcctggaggcacaacatcatggacttctccatgccctatttcatc
caggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaagctt
gacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccattgtt
tatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccagcct
ggctatggaggctacggctacccagcagcacccaccggctacggccaacctccccagcct
ggctttggctatggcatgtga
DBGET
integrated database retrieval system
