Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386027
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Entry
139386027 CDS
T10872
Name
(RefSeq) neuronal PAS domain-containing protein 1-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139386027
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
139386027
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
139386027
NCBI-ProteinID:
XP_070987513
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All DBs
Position
27:5856935..5878802
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AA seq
781 aa
AA seq
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MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKMRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLTGTPEPAPTSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPSTL
NEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQSHE
DLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYIISRTELPDTPL
DLLQLPESLRAERLKASSSPSELTPQARGSPGPQPMKSSVSKGEPDSKLREIYNPGVQSG
DRRKRPLRSDSEGAPPEMRRRLEEFCQREGSVSAASDLGSESEGEERAWEQGGDSARVKR
EEGPSKRGGETPVRGGGVHNGRAVIQHLKSVVSSPLSGPHNIKTEHEALAAGGRWTHTHT
SSHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSSPLP
CEERGMLSGGRGGGPDFELLQRLAAGGAAGRVLFHPLTLGPQGPQSLYAPSTIRYAPPEL
PPSHPGAEGLRADHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGATGSEE
D
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactagccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctccctctccccggggccatcaccagccagctggacaaggcctcggtcatccgt
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggggagaaccactgcagcaaaatgcgacgctcctcccactctctggct
actgacatgtttgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcggagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccccgagagcgcttccagctctgcctccacatcctccctgaccgggaccccc
gagcctgcccccacaagccctctctctccagggaatgaaccgcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctccgcccgc
tcggtgcgtcggccaatgggcttagtggcccttgcgcacacgctccctccctccacgctg
aacgaggtgcgcatggaaagccaaatgtttgtcttccgggtcaacatggacctgcaggtc
acctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtggtggga
cacacctgctaccacttcatccacgtggaagacctggataacatcagacagagccatgag
gacttgttgaggaagggtcaggtggtgaccgggtactaccgttggctccagaggagaggg
ggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccccacgaa
cgcaacgtcatctgggtcaactacatcatcagtcgaacagagctcccagacactcccctg
gatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcctcccct
tcggaactcacgccacaagcccgggggtctccaggtccacagccaatgaaaagctctgtg
agtaaaggtgagcctgactctaaactgagagagatctataatcccggagtccaatcaggg
gacaggaggaagcgtccgctgcggtctgactctgaaggcgctcccccagaaatgcggcgt
cgcctggaagagttctgccagagagaggggagtgtgtccgccgcctcagacctgggcagt
gagagcgagggagaggagagagcgtgggagcaggggggagacagcgcgagggtcaaacga
gaggaggggccttcgaaacgaggtggggagaccccagtgaggggcggcggggtgcacaac
ggccgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctctggtccccac
aacatcaagactgaacatgaggcactggctgcagggggtcgctggacacacacacacacc
tcctcacacacacaacccccaccctcgcacacacacaccccttgcggcagcctgaacggc
gacagtcccccgacccctatcccggactcctcctccagcagtgaagccccacccaaaggt
attttcaccccgccctcccccgccatgtctcctcccatgtccggctcctcccctctaccc
tgtgaggaacggggaatgttgtctggaggccgggggggcgggcctgactttgagctgttg
cagagactggcagcggggggtgctgcaggacgggtactgttccaccccctgaccctcggc
ccccaggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctg
cccccctcccaccccggtgctgaggggctgcgcgccgaccaccacaagggccccccagcc
ttcttcccccacctccagaggctggccggcctgccctccttcagtgggttctccgcctcg
gacaatcccttcaaccccttctgtatgaacggactgaggggggccacagggtccgaggag
gactga
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