Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386170
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Entry
139386170 CDS
T10872
Name
(RefSeq) protocadherin-8-like
KO
K16499
protocadherin delta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139386170
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139386170
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
139386170
NCBI-ProteinID:
XP_070987738
LinkDB
All DBs
Position
3:82359573..82363620
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AA seq
971 aa
AA seq
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MGFCGFRGVGECVVFAILFNSVQSTTTRYYTYEEDAPGTEIGNLSQDLKMDPAEDPQTSF
RFMQENNSCVIQMREIDGLLTVGETIDREQLCPRSPRCFVTFDIVAFSKEKFQLIHVEIE
VRDINDNSPQFLHNETTLEISENVQLDSRFPLDIAVDNDVGNNYIQSYHISPSSHFIVDV
RSREDGVKYAELVLVKAMDREAEDSYTVEVTATDGGEPPRSGSMTVHIKVLDFNDNSPTF
EHNSLKVELYEDSPVGYQVLKVHAFDPDAGINGEVVYGFVEDTSSEAMRIFNIDRISGAV
TLKTLVDYEKKISYELKIKASDLGTNSIPSTCKVVVDVVDVNDNAPEITIKPKTSTSDDV
AYITEAAAEESFVALISTSDSDSGSNGYVRSSLHGHEHFKLQQAYGDSFMIVTTTTLDRE
TIPEYNLTVVAEDLGTPPFKTIKQYTIRVTDENDNAPLFSKSIYEVSVLENNIPGSYITT
VVARDLDRGKNAKVSYKLIDSEVVGEASISTYVSIDPVSGSLYSLRSFDFETLQQIELTI
QADDKGSPQLSSTSVIRIKVVDQNDNYPYFTFPVMLNDSAEIPLPVNAPLGYLALRVQGQ
DEDEGMNGELSYRIVQGDSKIFSINKDTGEIALKQGLASAIGDVLEIKIALSDSGRSPLS
SSATIRFVVSDLQLSDDQLVIVLRSSDEESAGLDISVVVIIILGGGCTLLLIAIAIVVIT
CKLNRGGKDHDSKRDVTHSLFDSRHHPRLNSAEPNMFGDPRGFLNERTSSSLDESSLYEE
KSGELESQMFLPPKPFQTSSVWQGDKYYPQISSGIDQQSVKDSGKGDSDFNDSDSDISGD
GGKKNLRTFQTWAKGSFHAANTLAVDCQGTYCVIPTQSFQAPRDNAYTIGFIQAPVYNNA
HAYPHSWKDSGYNTSIPKARNTMQTFSNHTGTLPSYFTHQKRQSPAGLDEIQEHNQDITT
MATISEVATIL
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgggattctgcgggtttcgaggagttggagagtgcgtggtgtttgctattctgttcaac
tcggttcagtctacgactacaaggtactacacatatgaagaggatgcgcccgggacagag
attggaaatctgtctcaggatttaaagatggacccagcggaggaccctcaaacatctttc
cgcttcatgcaggagaacaattcgtgtgtgattcaaatgagggagattgatggactttta
actgttggggaaacaattgaccgggagcagctgtgcccgaggtccccgcggtgttttgtc
accttcgacatagttgccttctccaaagaaaagtttcagctgattcacgtagagatcgag
gtaagggacataaacgacaattcaccccagtttctccacaacgagacgacccttgaaata
tccgagaatgttcagctggactcccgattcccgttggacatcgctgttgacaatgatgtc
ggcaataactacatccaaagttaccatatctctccctccagccatttcatagttgatgtg
cgcagcagggaggatggagtgaagtatgctgaacttgtgcttgtgaaagcaatggataga
gaggctgaagattcctatacagttgaagtgacggcaacagatggcggagagccacccagg
tccggatcaatgactgttcatatcaaagtgctagattttaatgacaacagcccaacgttt
gagcacaactcactaaaagttgaactttacgaggattctcctgtaggttaccaagtgctt
aaggtgcatgcgtttgatccagatgctggtatcaatggcgaggtagtgtatggatttgta
gaagacacatcatctgaagcaatgcgtatatttaatatagaccggatttccggtgctgta
actttaaaaacattggttgattacgagaagaagatatcctatgaactgaaaattaaagca
tccgatttaggcactaattctattccatcgacttgcaaagtggttgttgatgtcgtagat
gtaaatgataacgcaccagaaatcaccatcaagccaaagacctcgacgagtgacgatgtg
gcttacatcacggaggccgcagcggaggaaagttttgtggcgctaatcagcacctcggac
agcgactctggctcgaacggttacgtgcgcagtagcctacacgggcacgaacatttcaaa
ttacaacaggcctacggggacagttttatgattgtaacaaccaccactttagatagagaa
acgatcccagagtataacctcactgtagtggctgaagaccttggaactcctcctttcaaa
accatcaagcagtataccatcagagtgacggacgagaacgacaacgcccccctcttcagt
aaatcaatttatgaagtttctgtcctggaaaataatattcccgggtcatatataactact
gttgtagcacgggaccttgatcggggtaaaaacgccaaagtgtcatataaactcatagac
tcagaggttgtcggggaggcttccatttcaacgtatgtgtctatagacccagtgtcaggg
tcattgtatagcctgagatctttcgattttgaaacgctccagcagattgaattaaccatc
caggctgacgacaagggctcacctcaactgtcaagcacatccgtgatcagaatcaaagtg
gttgatcagaacgacaactatccctattttacctttcccgttatgcttaatgactctgct
gaaattcctcttcctgtcaatgcaccattggggtatctggcactacgggtccaaggtcag
gatgaggatgagggtatgaatggtgagctcagctacagaatcgtacaaggtgactctaag
atattttcaatcaataaagacactggagaaatagctttaaaacagggtctggcctctgct
attggagacgtgttggaaatcaagattgcactgagtgacagtgggagatcccctctctcc
agcagtgccaccattcgctttgttgtctcagacttgcagctctcagacgaccaacttgtc
attgtattacggtcaagtgatgaggaaagcgcaggcttggatatttcagtagtagtaatc
attatactcggcgggggttgtactctgctgctgattgccatagcaattgttgttatcaca
tgcaaactgaaccgaggagggaaggaccatgactccaagagagacgtgactcacagcctg
tttgactccaggcatcatcccaggctcaactctgcagaacccaacatgttcggtgaccca
agaggtttcctcaatgaaaggacttcttcatctcttgatgagtccagcctatatgaagag
aaaagtggagagttggagtcccagatgttcctgcctcccaagcctttccaaacatcatct
gtgtggcaaggggacaaatactacccgcaaattagcagtggcattgaccagcaaagcgtg
aaggacagtggaaaaggagacagtgacttcaatgacagtgactctgacatcagtggggat
ggaggcaagaagaaccttcgcaccttccagacctgggccaaaggttcattccacgccgct
aacaccctcgctgtggattgccaaggcacttactgtgtaattccaacccaaagcttccag
gctcccagagacaatgcatacacaataggttttatccaagcaccggtctacaacaatgcg
catgcctatccccactcctggaaagactccggctacaacacaagcattcccaaagcaaga
aacaccatgcagacattctctaatcacaccggcaccctcccatcttacttcacacatcaa
aagagacaatctcctgccggacttgatgaaattcaggagcacaaccaagatattactaca
atggcaaccatatctgaagttgccaccattttgtaa
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