Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386174
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Entry
139386174 CDS
T10872
Name
(RefSeq) protocadherin-17-like
KO
K16499
protocadherin delta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139386174
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139386174
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PRIMA1
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
139386174
NCBI-ProteinID:
XP_070987749
LinkDB
All DBs
Position
3:82397498..82421979
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AA seq
1108 aa
AA seq
DB search
MRLPVICFLLFWAKARTLKNLNYSVPEEQGPGTVIGNIAKDAGFGPVEKGTKSNFRVLEN
SAQHLIDVDSESGLLFTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDVVDINDNS
PSFPSDHINIDISENAAAGTRFPLTIAHDSDSGQNGIKTYQVTRDDYNTFSLDLKLRGDG
TIYPELVVQRPLDREDQSHHTLLLTAIDGGEYPRSGSMQINVRVTDSNDNSPVFDKPGYM
LELPENSPPGRMLIDVNATDQDEGSNGQVVYSFSGYASDRVQELFSIDPKTGVIKIQGEI
DYEDNPTIEFDVQAMDLGPNPIPGHCKISVKVLDKNDNWPVISFVSVRQGAISEAAPPES
VIALVRVTDKDSGRNGQLQCRVLGNVPFRLQENNDNFYTLLTDRPLDRELKDEYNVTIVA
RDNGIPSLNYTKSFTVKILDENDNAPRFTKTVYVLQVPENNIPGEYLGSVLAHDPDIGQN
GTVSYSISPSHIGDVSVYTYVSVNPTNGAIYASRSFNYEQTKFFEFKVQAKDAGSPHMEG
SATVRVSVLDVNDNLPVIVLPLLINDTVEIMVPRNVGLGYIVTTVRAVDQDHGESGRLTY
EIWEGNEEHLFEMDPVAGEVRTAHAVWEDVAPAVELVVKVTDHGKPPLSAVAKLIIKANT
GAMAAGESSASGEQQHWDMSLPLIITLCIISLMLLAVMTTIAVKSKHQDKEAGNYNCRMA
EYSNSNPPVGNGKKKRINKSDIMLVQSEVEERDSVSRMNVVSSPSLITSPICFDYQATSP
LPLTLPRSEVMYLKTTFNSLTVPRAGCHSSFAGLTTETPTNIMSVIQTDNFPSEPNNVAN
RQPFAQSSSTFKDAERASLRDSGHGDSDQADSDLDTNKGCACNTSARGALKMKATAVNGQ
PLDQEESCRSVHCTDECRALGHSDRCWMPKLRVGGQADSGDNRTDLFIPVGMEATAETEI
YGSLNRSAARKTLSTFGKEQRDSTILVANIKPYFKSQRARSPLLQECSSGSSSPTKGNTP
LDSHTKGPREEVGRDGEGGSDSSAYGPPDGQCSPPHTELEEPSYMACGLTPKSLSNSLIH
SSEIRSGIISQECVGMECVSPNQRDSGD
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcttcctgtcatatgtttccttctcttctgggctaaagcccggacactgaaaaat
ctaaattattctgttccggaggagcagggacctggaactgttatcggaaacattgctaag
gatgccggatttggaccggtggagaaaggaaccaaatcgaactttcgagttctggagaat
tctgctcaacatctcatagatgtggattcggagagtgggctgctttttaccaaacagcgg
attgacagggagacattgtgcaaacgcaaccctaagtgtcagctctctatggaagtgttt
gccaacgacaaggaaatatgcatgatcaaaattgatgtagtggatataaacgacaactcc
cccagtttcccctcagatcacatcaatattgatatttcagagaacgcagctgctgggaca
cggttccctttaacaattgcacacgactcagattctggacaaaacggaataaagacttat
caggtcaccagagatgattacaatacattttctttggacttgaaattgaggggtgatgga
accatatatcctgaattggtggttcagcgccctctagatagggaagatcagtctcatcac
accctccttttgacagccattgatggaggggagtatccaagatcagggtccatgcaaatc
aatgtgagagttactgattcaaatgataatagcccagtatttgacaaacccggctacatg
ctggagcttcctgaaaactcaccgcctgggagaatgctgatagatgtgaatgcaactgat
caagatgagggcagcaatggacaggtagtctattctttcagtggatatgcatccgataga
gtccaggagttgttttctattgatcccaaaacaggtgtcattaagattcagggagaaatt
gactatgaggataatccaaccattgaatttgacgtgcaggccatggacctggggcctaac
cccatccctggccattgtaagatttcagtcaaagtgcttgacaagaatgataactggccc
gttataagttttgtctccgtccgccagggagctatcagtgaggcagcgcctccagaatct
gtcatcgccctggtgagagtcactgataaggattctgggaggaatggccagctccagtgc
agggtgcttggcaatgtaccattcaggctgcaggaaaacaatgataatttttacactctg
ctcacagacagacctctagacagggaactgaaagacgaatataacgtgaccatagtggcc
agagacaacggaataccttcgttgaattacaccaaatcatttacagtgaaaatcttagat
gagaatgataatgcaccgcgtttcaccaagacagtgtacgtgctccaggtgccagagaac
aacatcccaggggagtacttaggctcagttctggctcatgatccagatataggtcagaat
ggaactgtgtcctactccatttcaccgtcacacattggagacgtgtcagtttacacctac
gtgtctgtcaatcctaccaacggagccatatacgcctcaaggtctttcaactacgaacaa
actaagttctttgagttcaaagttcaagctaaagatgcagggtctcctcatatggagggc
agtgccacagtcagagtcagtgtgcttgacgtcaatgacaatctaccagttattgtatta
cccctcctgataaatgacactgtggaaatcatggtccctagaaatgtaggtctggggtac
atagtgaccacggtgagagcggtcgatcaggaccacggggagagcggtcgtctgacctac
gagatctgggagggtaacgaggagcacctgtttgagatggaccctgtggccggcgaggtg
aggactgcccatgctgtgtgggaggacgtggccccagctgtagagctggtagtgaaggta
accgaccacggcaagcccccactgtctgccgtggctaagctgatcattaaggccaacaca
ggagccatggcagcaggggagtccagcgccagcggggagcagcagcactgggacatgtcc
ctgcccctcatcatcaccctctgcatcatctccctcatgctcctggctgtcatgactacc
atcgccgttaagtccaagcatcaagataaggaggctgggaattataactgccgtatggcc
gagtactccaactccaatcccccagttggaaacggcaagaagaagaggatcaacaagagc
gacatcatgctggtgcagagcgaggtggaggagagggactctgtgagcaggatgaacgtg
gtgagcagcccgtctctcatcacctcgcctatctgtttcgactaccaggcgaccagcccc
ctgcctctcacgctgcccaggtcagaggtcatgtatctgaaaaccactttcaacagcctg
acggtacctcgggctggctgtcactcaagctttgcggggcttaccacagagactcctacg
aatataatgtcagtgatacagacggataattttccttcggagccgaataacgtggccaac
aggcaaccatttgctcaaagcagctcaacttttaaggatgcagagcgagcgagcctccga
gacagtggccatggtgatagtgaccaggctgatagtgacctggatactaataaaggctgc
gcctgcaacacgtctgccaggggggccctcaagatgaaagccacagcagttaatggccag
cctcttgaccaggaagaaagttgcagatctgttcactgcacagatgaatgtcgtgcgctg
ggccattctgacagatgctggatgccaaagctacgtgtaggaggccaagcagacagcggc
gataatcgcaccgaccttttcatcccagtgggaatggaggccacggctgagacagagatt
tatggcagcctcaaccgcagcgcagccagaaaaaccctcagcacgttcggcaaggagcag
cgggacagcaccatcctagtggccaacatcaaaccctacttcaagtctcagcgtgcccgc
agtcccctgctgcaggagtgctcttctgggtccagcagccccaccaaagggaacacaccc
ctggactcccacaccaaagggcctagggaggaggtggggagggacggggagggtggctca
gacagcagtgcctatggacccccagacggccaatgttcaccgccccatacggaattggag
gagccgtcatacatggcctgcggcctcacgcccaagtccctgtcaaacagccttatccac
agctctgagatcagatctgggatcatcagccaggagtgtgtggggatggagtgtgtcagt
ccaaaccagcgggactctggggactga
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