Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139386400
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Entry
139386400 CDS
T10872
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139386400
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Others
EARP complex
139386400
Endosome - Golgi transport
Tethering complex
GARP complex
139386400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
Syndetin_C
FBF1
GrpE
PsaD
Sec8_N
NBD94
Laminin_II
XhlA
Motif
Other DBs
NCBI-GeneID:
139386400
NCBI-ProteinID:
XP_070988072
LinkDB
All DBs
Position
27:complement(18255936..18285811)
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AA seq
831 aa
AA seq
DB search
MMMEEEELEFAEDLEAILHLTPGVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLA
NIDDVVNKIRLKIRCLDDNIRTVVRGQTNVGQDGRQALEEAQVAIGQLFGKIKDIKDKAE
KSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQ
GVVNVLEHFHKYMGIPQIRQLSERVKVAQSELGTQILADFEEAFPAQGSKRAGGPSNVLR
DACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYAWIKRQLVDYE
EKYGRMFPEEWCMTERIAVEFCHITRTELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLA
KRFSGCTLTDRPGVKKPETPLESTNPFLEDEIGEDGSEMEEDLDRPKKHKAPDNPFHGII
SKCFESHLYVYIESQDKNLGEMIDRFVSDFRAQGPPKAGTEDGGAVLPSCADLFVYYKKC
MVQCSQLSTGEPMIAFTTIFQKYLREYAWKILSGNLPKTSSNSGGLTIKSLLQEKEGSEA
AKFTVEELCLICSILSTAEYCLATTQQLEEKLKEKVDKNLVERINLTGEMDTFSNVISNS
IQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLASTRK
YFTQFCIKFTNSFIPKFINHLFRCKTISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKA
PASYTKIVVKGMTRAEMILKVVMAPHEPSVVFVDNYIKLLADGNPETFQKTLDMKGLKRS
EQSSMLELFRQRLPTPPSGTDGGPSLSFSTPTPEQENSRIRKLEKLIKKRL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaggaggaagaattggaatttgcggaggatttggaggcgattttgcacctt
actcctggggtgcagttggccatcgagcaggttttccccagtcaagacccattggacaga
gcagattttaatgctgtggaatacatcaatacattgtttcctactgagcagtcactggct
aatatagatgatgtagtcaacaagatccgtctgaagattcggtgtctggatgacaacatc
aggacggtggtgagaggccagaccaatgtgggccaggatggcagacaggcactggaggag
gctcaggtagccatcggccagctctttggcaaaatcaaagacattaaggacaaggctgag
aaatctgagcaaatggtcaaggagataacgcgggacatcaaacagctggaccatgctaag
cgtcacctgaccacctccatcaccaccctcaaccacctgcacatgctggccgggggcgtg
gactctctagaggcaatgacgaggaagaggcagtatggagaggtggctaacctgctacag
ggtgtagtcaacgtcctggagcacttccacaaatacatgggaatccctcaaatcagacag
ctctcagagagggtaaaagtggcccaaagcgagctggggactcagatcctggcagacttt
gaagaggccttccccgctcaggggtcaaagagagcagggggacccagtaatgttctgagg
gatgcctgtcttgtggccaacgtcttggacccccgcatcaaacaggagatcatcaagaag
ttcatcagacagcacctctctgagtacatggtgctcttccaggagaatcaggatgtagct
tggttggataagattgaccggcgttacgcctggattaagcgtcagctggtggactatgag
gagaagtacggacgcatgttccctgaagagtggtgtatgactgaacgcatcgctgtggag
ttctgccacatcaccaggacagagctggccaaagtgatgcggacgcgggccaaagagatc
gaggtcaagttgcttctgtttgccattcagaggaccaccaacttcgaggggctgctcgcc
aagcgcttctctgggtgcaccctcaccgacaggcccggggtgaagaagccggagacacca
ctggagtccaccaaccctttcctggaggacgagattggagaggatgggtcagagatggag
gaggatctggataggcccaagaagcacaaggctcctgacaaccccttccatggcattatt
tccaagtgcttcgagtctcacctctatgtctacatcgagtctcaggacaagaacctgggg
gagatgattgaccgtttcgtgtcagacttccgggcacagggcccccccaaggcgggcaca
gaggacggtggagcggtgctgcccagctgtgctgacctgttcgtctactataagaagtgc
atggtgcagtgctctcagctcagcacaggggaacctatgatcgccttcaccaccatcttc
cagaagtacctcagagagtatgcctggaagatactgtctggaaacctgcccaagactagc
agtaacagtggaggactgaccatcaagagtctactgcaggagaaggagggttcggaggct
gctaagttcactgtagaggagctgtgcctcatctgtagcattctcagtactgcagagtac
tgtctggccacaacacagcagttggaggagaagctgaaggagaaggtggataagaacctg
gtggagagaatcaacctgactggagagatggacaccttcagcaatgtgatctccaacagt
atccagttgcttgttcaggacctggacgctgcctgtgaccctgctctcactgccatgagc
aagatgccatggcagagcgtagagcatgtaggtgaccagagtccctatgtgacgtcagtc
atcatgcacatcaaacagaacgtccccatcatcagagataacctggcctccacacgaaaa
tacttcacccagttctgcatcaagttcaccaactctttcattcctaaattcatcaaccac
ttgttcaggtgtaagactatcagcatggtgggggctgaacagctcctcctggacacccac
tccctgaagacagtgttgttggatctgccctctataggctctcaggtggtccgcaaggcc
ccagccagctacaccaagatagtcgtgaaggggatgacccgcgctgagatgatcctcaag
gtggtcatggccccccatgaaccctctgtggtgtttgtggataactacatcaagctcctt
gctgacgggaacccagagaccttccagaaaactctggatatgaaggggttgaagcgcagt
gagcagagcagcatgttggagctcttcagacagaggttacccactccaccctcagggacc
gatggaggcccctctctctccttcagcacccccacccccgagcaggagaactcgcgcata
cgcaaactggagaagctcatcaagaagagactctga
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